DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1698 and Slc6a1

DIOPT Version :9

Sequence 1:NP_001260835.1 Gene:CG1698 / 36006 FlyBaseID:FBgn0033443 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_848818.1 Gene:Slc6a1 / 232333 MGIID:95627 Length:599 Species:Mus musculus


Alignment Length:584 Identity:199/584 - (34%)
Similarity:323/584 - (55%) Gaps:55/584 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 GDSPSGVEAGQPGKKRDSWNNDIEFLMSCIALSVGLGNVWRFPFTALENGGGAFVIPYLIVLILV 123
            ||.|.          ||:|....:|||||:..::|||||||||:...:||||||:|||.:.||..
Mouse    39 GDLPD----------RDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFA 93

  Fly   124 GKPVYYLEMLLGQFSSRGSVKVYDFSPIMRGIGYGQVLATGIVTTYYATLMALTLRYFVDSFYPT 188
            |.|::.||..|||::|.|.:.|:..:|:.:|:|....:.:..:..||..:::..:.|..:||..|
Mouse    94 GVPLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTT 158

  Fly   189 LPWSYCREEWGTE-CLDSGPQEASRATSLAGSGVRTTSA--EFYFTNIILREKASIDDGIGYPS- 249
            |||..|...|.|: |..:        .||..: ...|||  ||:..|:     ..:.||:..|. 
Mouse   159 LPWKQCDNPWNTDRCFSN--------YSLVNT-TNMTSAVVEFWERNM-----HQMTDGLDKPGQ 209

  Fly   250 --WSLALALAVAWIVIAGIMFKGVKSSGKASYFLALFPYVVMLVLLVRALTLPGAFDGVLYFLRP 312
              |.||:.||:||:::...::|||..:||..||.|.:||:::::|..|.:|||||.:|:|:::.|
Mouse   210 IRWPLAITLAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITP 274

  Fly   313 QWHKLLEPQVWYAAVTQVFFSLAICFGNIIMYASYNRFGHNIYRDANIVTTLDTFTSLLSGVIIF 377
            .:.||.:.:||..|.||:|||..:..|::|...|||.|.:|:|||:.||..:::.||:.:|.:||
Mouse   275 NFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIF 339

  Fly   378 GILGNLAYENNTTDIASVVNGGPGLAFISYPDAIAKFKWLPQLFSVLFFLMLFVLGIGSNVGMAS 442
            .|:|.:|:....: ||.|...||||||::||:|:.:....| |:::|||.||.:|||.|......
Mouse   340 SIVGFMAHVTKRS-IADVAASGPGLAFLAYPEAVTQLPISP-LWAILFFSMLLMLGIDSQFCTVE 402

  Fly   443 CMSTVIKDQFGHL---KNWTVVVGIAIVGYFLGLLYITPGGQFLLNLVDYFGVTFVALV-LAIFE 503
            ...|.:.|::..|   :....:..:.||.|.:||..||.||.::..|.||:..:.::|: |..||
Mouse   403 GFITALVDEYPRLLRNRRELFIAAVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFE 467

  Fly   504 LVTIAWIYGVKRLCRDVEFMIGIKTSLYYRICWAVVTPLLMLTILIYTLVLYEPLKYKDYTYQSG 568
            .|:|:|.|||.|...:::.|:|.:..:::::||:..||:::..:.:::.|...||....|.:...
Mouse   468 CVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFLFSAVQMTPLTMGSYVFPKW 532

  Fly   569 VYVFGW--CLSAF----GVGQVLFWAIPAVRKQPSHLGLWARIRKAFEP-----LPNWGPSDPQ 621
            ....||  .||:.    |....:|..:....||        |::...:|     .|..||..||
Mouse   533 GQGVGWLMALSSMVLIPGYMAYMFLTLKGSLKQ--------RLQVMIQPSEDIVRPENGPEQPQ 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1698NP_001260835.1 SLC6sbd 75..552 CDD:271359 176/486 (36%)
Slc6a1NP_848818.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
SLC6sbd_GAT1 2..599 CDD:212075 199/584 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..599 5/12 (42%)
PDZ-binding 597..599
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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