DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1698 and snf-11

DIOPT Version :9

Sequence 1:NP_001260835.1 Gene:CG1698 / 36006 FlyBaseID:FBgn0033443 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_505873.2 Gene:snf-11 / 191770 WormBaseID:WBGene00004910 Length:610 Species:Caenorhabditis elegans


Alignment Length:555 Identity:186/555 - (33%)
Similarity:289/555 - (52%) Gaps:59/555 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 KRDSWNNDIEFLMSCIALSVGLGNVWRFPFTALENGGGAFVIPYLIVLILVGKPVYYLEMLLGQF 137
            :|:.|::..:|:||||..::|||||||||:...:||||||:|||.|.|:..|.|::.||...||.
 Worm     9 EREQWSSWADFIMSCIGYAIGLGNVWRFPYLCYQNGGGAFLIPYCISLVFCGAPLFILETSWGQL 73

  Fly   138 SSRGSVKVYDFSPIMRGIGYGQVLATGIVTTYYATLMALTLRYFVDSF-YPTLPWSYCREEWGTE 201
            .|.|.:.::...||.:|:|....:....:..||..:::....|..:|| ...:||..|...|.| 
 Worm    74 MSVGGLGMFKICPIFKGVGIAAAVMAFWLNIYYIVVLSWAATYLYNSFTMSDVPWKNCDHAWNT- 137

  Fly   202 CLDSGPQEASRATSLAGSGVRTTSAEFYFTNII-------------LREKAS------------- 240
                 |...|....:.....||. |||:...::             :.||.:             
 Worm   138 -----PNCRSEYVKIPCDSNRTI-AEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVCSAADLSVVS 196

  Fly   241 ------------IDDGIGYPS---WSLALALAVAWIVIAGIMFKGVKSSGKASYFLALFPYVVML 290
                        |..|:..|.   |.|||.|.:.||:....:|||||.:||..|..|.|||:::.
 Worm   197 PVKEFWNHRVLGISSGLENPGGIRWDLALFLLLVWIICYLCIFKGVKWTGKVVYITASFPYMMLF 261

  Fly   291 VLLVRALTLPGAFDGVLYFLRPQWHKLLEPQVWYAAVTQVFFSLAICFGNIIMYASYNRFGHNIY 355
            .||:|.|||.||..|:.::|:|.:.||||.:||..||||||||..:..|.::...|||:|.:|:|
 Worm   262 CLLIRGLTLEGAGVGLEFYLKPDFSKLLESKVWVDAVTQVFFSYGLGLGALVALGSYNKFNNNVY 326

  Fly   356 RDANIVTTLDTFTSLLSGVIIFGILGNLAYENNTTDIASVVNGGPGLAFISYPDAIAKFKWLPQL 420
            :.|..|..:::.||:.:|.:||..:|.:|.:...: :|.|...||||.|::||..|.:..: .|.
 Worm   327 KQALTVCFVNSGTSVFAGFVIFSFIGFMATQQEKS-VAEVAQAGPGLLFLAYPSGILQLPY-TQF 389

  Fly   421 FSVLFFLMLFVLGIGSNVGMASCMSTVIKDQFGHLK----NWTVVVG-IAIVGYFLGLLYITPGG 480
            :|.|||||:..||:.|.........|.|.|:|..::    ...:.|| |.::.|.:||..:|.||
 Worm   390 WSCLFFLMVLFLGVDSQFCTMEGFFTAIIDEFPQIRRKKYGREIFVGVICVISYLIGLTTVTEGG 454

  Fly   481 QFLLNLVDYFGVTFVALV-LAIFELVTIAWIYGVKRLCRDVEFMIGIKTSLYYRICWAVVTPLLM 544
            .::..|.|::..:..||: |..||.:.|:|..|:.|....::.|||...|.:::.||...||.:.
 Worm   455 FYVFQLFDFYAASGWALLWLLFFECIAISWSLGIDRWYEHMKSMIGYYPSAWWKFCWVFATPSVC 519

  Fly   545 LTILIYTLVLYEPLKYKDYTYQSGV--YVFGWCLS 577
            ..:|::.|:.|:||:...|.|...|  ::|||.||
 Worm   520 FGVLLFGLIKYQPLRIDAYNYDYPVWGHIFGWFLS 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1698NP_001260835.1 SLC6sbd 75..552 CDD:271359 173/524 (33%)
snf-11NP_505873.2 SLC6sbd-TauT-like 10..586 CDD:271387 186/554 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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