DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1698 and snf-6

DIOPT Version :9

Sequence 1:NP_001260835.1 Gene:CG1698 / 36006 FlyBaseID:FBgn0033443 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_001367976.1 Gene:snf-6 / 191768 WormBaseID:WBGene00004905 Length:714 Species:Caenorhabditis elegans


Alignment Length:597 Identity:172/597 - (28%)
Similarity:303/597 - (50%) Gaps:62/597 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 SGVEAGQPGKKRDSWNNDIEFLMSCIALSVGLGNVWRFPFTALENGGGAFVIPYLIVLILVGKPV 127
            :||  |...:.|.:|:|..::|::.|..:.|:|:.|:|||...::||.||::|||.:|.|...|:
 Worm    55 TGV--GDENRIRGNWSNKSDYLLAVIGFTAGVGSFWKFPFLVFQHGGAAFLVPYLCMLCLASLPM 117

  Fly   128 YYLEMLLGQFSSRGSVKVYDFSPIMRGIGYGQVLATGIVTTYYATLMALTLRYFVDSFYPTLPWS 192
            :::||:||||||..::.|:...|:.:|||:.||..:|....::..:.|.||.|.::||..::|||
 Worm   118 FFMEMVLGQFSSSAAISVWKVVPLFKGIGFAQVTISGFFAVFFNIISAWTLFYLINSFSFSIPWS 182

  Fly   193 YCREEWGTECLDSGP----QEASRATSLAGSGV-------RTTSAEF----------YFTNIILR 236
            .|...|..|....|.    :|.:....:.||.:       .||....          ||.|.:|.
 Worm   183 NCANSWSGENCTLGTRIQCKEMNGTLLVNGSCIVEHASSNETTVIPLHDLGSIPSLKYFHNDVLM 247

  Fly   237 EKASIDDGIGYPSWSLALALAVAWIVIAGIMFKGVKSSGKASYFLALFPYVVMLVLLVRALTLPG 301
            ....:|| .|..:|.|.|.:...||.:...:|:|||||||..|...:.|::::.|||.|.|||.|
 Worm   248 LSKGVDD-FGTLNWYLGLCVLACWIAVFLCLFQGVKSSGKVVYVAVIVPFIILTVLLTRLLTLDG 311

  Fly   302 AFDGVLYFLRPQWHKLLEPQVWYAAVTQVFFSLAICFGNIIMYASYNRFGHNIYRDANIVTTLDT 366
            :...|.|||.|:|..|::..||..|..|.|:|::.|.|.:...|||:||.:|||:|..:|..:|.
 Worm   312 SLAAVFYFLTPKWEILMDLHVWGEAAVQAFYSVSCCSGGLFTIASYSRFHNNIYKDIWLVLIVDV 376

  Fly   367 FTSLLSGVIIFGILGNLAYENNTTDIASVVNGGPGLAFISYPDAIAKFKWLPQLFSVLFFLMLFV 431
            ..||:..::.|..:|...||...:.....:..|..|.|:...:|:|.....| |::.|||:|:.:
 Worm   377 IVSLVGCLLTFSAIGFTCYEFAISLDKFHIRDGFHLVFVFLAEALAGVSVAP-LYAGLFFIMILL 440

  Fly   432 LGIGSNVGMASCMSTVIKDQF--------GHLKNWTVVVGIAIVGYFLGLLYITPGGQFLLNLVD 488
            :...:.:.:...:.:.|.|::        .|:  .|.|..:.|:   |.:.:....|.|.:.|:.
 Worm   441 VVHATQMFVVETIVSSICDEYPERLRRNRRHV--LTTVCALFIL---LSIPFCLSSGLFWMELLT 500

  Fly   489 YFGVTFVALVLAIFELVTIAWIYGVKRLCRDVEFMIGI--KTSLYYRICWAVVTPLLMLTILIYT 551
            .|.:|:..:|:|..|.:.|.|:|||..:..:.::::|.  ...::::|.:..:.|::.|.||.:.
 Worm   501 QFVLTWPLVVIAFLECMAINWVYGVDNMLDNAKWIVGYWPPCYIFWKILFKFICPMVYLAILCFL 565

  Fly   552 LVLYEPLKYKDYTYQSGVYVFGWCLSAFGVGQVLFWAIPAVRKQPSHLGLW----------ARIR 606
            .:.:..::|:.|.:.....:..||:::|.:  :|   ||.|       |:|          .:..
 Worm   566 WLDWNSIQYESYQFPYWSILTAWCIASFPL--IL---IPIV-------GIWQFCIAKGTITQKWW 618

  Fly   607 KAFEPLPNWGPS 618
            :...|...|||:
 Worm   619 RVLYPDDAWGPA 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1698NP_001260835.1 SLC6sbd 75..552 CDD:271359 153/507 (30%)
snf-6NP_001367976.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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