DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1698 and snf-5

DIOPT Version :9

Sequence 1:NP_001260835.1 Gene:CG1698 / 36006 FlyBaseID:FBgn0033443 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_496735.1 Gene:snf-5 / 174923 WormBaseID:WBGene00004904 Length:728 Species:Caenorhabditis elegans


Alignment Length:733 Identity:202/733 - (27%)
Similarity:338/733 - (46%) Gaps:96/733 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 NNNNNDNGYMNQAYVGSLNASTISIPGAYKPNESSN---GKKTLSEGSGSAPPPGHGDSP-SGVE 66
            ::.:|:.....||  .|:...:.|.|...:.::.||   .:|::.:.:.|...|...|:. :.|.
 Worm     3 DSGSNEEAMKRQA--PSVKFDSPSKPDPQQVSQQSNQLSSQKSIQQSTQSKIDPSRIDTKNTTVT 65

  Fly    67 AGQP---------GKKRDSWNNDIEFLMSCIALSVGLGNVWRFPFTALENGGGAFVIPYLIVLIL 122
            ..:|         .:|||.:.|..||:::.:.|:|||||:||||..|..|||.||:||||....|
 Worm    66 TTRPTLDTPPEEEEEKRDGFGNSFEFVLTSLGLAVGLGNIWRFPTRAYNNGGSAFLIPYLTCAFL 130

  Fly   123 VGKPVYYLEMLLGQFSSRGSVKVY-DFSPIMRGIGYGQVLATGIVTTYYATLMALTLRYFVDSFY 186
            .|.|..|.|.|.||:..:....:: ...||:.|:|:..|....:|..||..:::....|.::...
 Worm   131 FGLPAVYFEFLTGQYQGKSPPVIFRRVRPILEGVGWMGVFVAALVAIYYIVIVSWISIYMINICR 195

  Fly   187 PTLP-WSYCREEW--GTECLDSGPQEASR------------ATSLA----------------GSG 220
            .... ||:|..:|  ||.|:....|...:            .:||.                |:.
 Worm   196 GHFALWSHCNNDWNNGTSCITMADQYLCKNHTKVMANSTLWNSSLPIPDKMVYFNGACQDANGTD 260

  Fly   221 VRTTSAEFYFTNIILREKASIDDGIGYPSWSLALALAVAWIVIAGIMFKGVKSSGKASYFLALFP 285
            |.|.:.:::.|.|:......:|.| |: :|.:..|::|.|::....:.||.|..||.||...|.|
 Worm   261 VSTATEQYFMTYIVQPSSGMLDFG-GF-NWPVFAAMSVCWLLTGLGILKGAKIMGKISYVSVLVP 323

  Fly   286 YVVMLVLLVRALTLPGAFDGV-LYFLRPQWHKLLEPQVWYAAVTQVFFSLAICFGNIIMYASYNR 349
            ||:::||.:..:...|:..|: :||..|.:.||.|...|..|:.|:.|||::..|.:|..:||:.
 Worm   324 YVLVVVLFINGVFQDGSGVGLEMYFGTPNYTKLYEQDTWTEALKQLCFSLSVGHGGLISLSSYSP 388

  Fly   350 FGHNIYRDANIVTTLDTFTSLLSGVIIFGILGNLAYENNTTDIASVVNGGPGLAFISYPDAIAKF 414
            ..:||:|||.||...||..||:.|..:|..||.|| :....|:..||..|..|||:.||:|:.:.
 Worm   389 KRNNIFRDALIVIIGDTTMSLVGGGAVFATLGYLA-KATGQDVKDVVKSGLSLAFVVYPEAMTRM 452

  Fly   415 KWLPQLFSVLFFLMLFVLGIGSNVGMASCMSTVIKDQFGHLKN--WTVVVGIAIVGYFLGLLYIT 477
            . :|.|:..:||||||:||..:.:.:.....:.|.||:...:|  |.||:....|.|.:||::.|
 Worm   453 P-VPWLWCFIFFLMLFLLGASTEIALVDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFST 516

  Fly   478 PGGQFLLNLVDYFGVTFVALVLAIFELVTIAWIYGVKRLCRDVEFMIGIKT----------SLYY 532
            ..|.:...:.|.:...|.::...:.||:.:.:|||.:.:..|:..::|...          |.|:
 Worm   517 RAGYYWFEMFDEYAAGFSSVCTVVCELLVMMYIYGFRNVRDDITEVVGHARNKFTGAIGAHSWYF 581

  Fly   533 RICWAVVTPLLMLTILIYTLVLYEPLKYKDYTYQSGVYVFGWCLSAFGVGQV-LFWAIPAVR--- 593
            ...|.|::|.:.|.::..:.|...|...:...|.:...:|||.||...|..| :|..:..:|   
 Worm   582 TANWMVISPSIALILVGLSFVREYPYMGRHDIYPAVFDIFGWFLSFLPVIIVPIFMLLNFIRCRN 646

  Fly   594 ----------KQPSHLGLWARIRKAF--------EPLPNWGPSDPQTLKRYQLFVQEGNAN---- 636
                      .|..|.. :.||...:        :.||:..|.|.:.:.......:..||.    
 Worm   647 RGHSYRTLFMLQKQHAS-YRRIAANYSKDQLALQDQLPDKEPWDEENVDLTDSESESRNAASGDV 710

  Fly   637 -----ALFRRSSIWHKIY 649
                 |....||.:|::|
 Worm   711 PIDDVATIDTSSTYHQVY 728

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1698NP_001260835.1 SLC6sbd 75..552 CDD:271359 159/521 (31%)
snf-5NP_496735.1 SLC6sbd 83..601 CDD:271359 159/521 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28590
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

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