DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1698 and Slc6a3

DIOPT Version :9

Sequence 1:NP_001260835.1 Gene:CG1698 / 36006 FlyBaseID:FBgn0033443 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_034150.1 Gene:Slc6a3 / 13162 MGIID:94862 Length:619 Species:Mus musculus


Alignment Length:569 Identity:199/569 - (34%)
Similarity:320/569 - (56%) Gaps:25/569 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PGAYKPNE-------SSNGKKTLSEGSGSAPPPGHGDSPSGVEAGQPGKKRDSWNNDIEFLMSCI 88
            |.|..|.|       ..||.: |:..:...||    .:|..|:      :|::|:..|:||:|.|
Mouse    21 PNAVGPREVELILVKEQNGVQ-LTNSTLINPP----QTPVEVQ------ERETWSKKIDFLLSVI 74

  Fly    89 ALSVGLGNVWRFPFTALENGGGAFVIPYLIVLILVGKPVYYLEMLLGQFSSRGSVKVYDFSPIMR 153
            ..:|.|.||||||:...:||||||::|||:.:::.|.|::|:|:.||||:..|:..|:...|:::
Mouse    75 GFAVDLANVWRFPYLCYKNGGGAFLVPYLLFMVIAGMPLFYMELALGQFNREGAAGVWKICPVLK 139

  Fly   154 GIGYGQVLATGIVTTYYATLMALTLRYFVDSFYPTLPWSYCREEWGT-ECLDSGPQEASRATSLA 217
            |:|:..:|.:..|..:|..::|..|.||..||...|||.:|...|.: .|.|:....:|....|.
Mouse   140 GVGFTVILISFYVGFFYNVIIAWALHYFFSSFTMDLPWIHCNNTWNSPNCSDAHSSNSSDGLGLN 204

  Fly   218 GSGVRTTSAEFYFTNII-LREKASIDDGIGYPSWSLALALAVAWIVIAGIMFKGVKSSGKASYFL 281
            .:...|.:||::...:: |.:...||| :|.|.|.|...|.:..:::...::||||:|||..:..
Mouse   205 DTFGTTPAAEYFERGVLHLHQSRGIDD-LGPPRWQLTACLVLVIVLLYFSLWKGVKTSGKVVWIT 268

  Fly   282 ALFPYVVMLVLLVRALTLPGAFDGVLYFLRPQWHKLLEPQVWYAAVTQVFFSLAICFGNIIMYAS 346
            |..||||:..||:|.:|||||.||:..:|...:::|.|..||..|.|||.|||.:.||.:|.::|
Mouse   269 ATMPYVVLTALLLRGVTLPGAMDGIRAYLSVDFYRLCEASVWIDAATQVCFSLGVGFGVLIAFSS 333

  Fly   347 YNRFGHNIYRDANIVTTLDTFTSLLSGVIIFGILGNLAYENNTTDIASVVNGGPGLAFISYPDAI 411
            ||:|.:|.||||.|.|::::.||..||.::|..||.:|.::| ..|..|...||||.||.||:||
Mouse   334 YNKFTNNCYRDAIITTSINSLTSFSSGFVVFSFLGYMAQKHN-VPIRDVATDGPGLIFIIYPEAI 397

  Fly   412 AKFKWLPQLFSVLFFLMLFVLGIGSNVGMASCMSTVIKDQFG--HLKNWTVVVGIAIVGYFLGLL 474
            |... |...::.:|||||..|||.|.:|....:.|.:.|:|.  |.......:||.:..:.|.|.
Mouse   398 ATLP-LSSAWAAVFFLMLLTLGIDSAMGGMESVITGLVDEFQLLHRHRELFTLGIVLATFLLSLF 461

  Fly   475 YITPGGQFLLNLVDYFGVTFVALVLAIFELVTIAWIYGVKRLCRDVEFMIGIKTSLYYRICWAVV 539
            .:|.||.::..|:|:|......|...:.|.:.:||.|||::...|::.|.|.:.:||:|:||.:|
Mouse   462 CVTNGGIYVFTLLDHFAAGTSILFGVLIEAIGVAWFYGVQQFSDDIKQMTGQRPNLYWRLCWKLV 526

  Fly   540 TPLLMLTILIYTLVLYEPLKYKDYTYQSGVYVFGWCLSAFGVGQVLFWA 588
            :|..:|.:::.::|.:.|..|..|.:.......||.::...:..|..:|
Mouse   527 SPCFLLYVVVVSIVTFRPPHYGAYIFPDWANALGWIIATSSMAMVPIYA 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1698NP_001260835.1 SLC6sbd 75..552 CDD:271359 179/480 (37%)
Slc6a3NP_034150.1 SLC5-6-like_sbd 60..613 CDD:294310 188/519 (36%)
Interaction with TGFB1I1. /evidence=ECO:0000250 560..589 4/16 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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