DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1688 and Kcna6

DIOPT Version :10

Sequence 1:NP_610516.1 Gene:CG1688 / 36005 FlyBaseID:FBgn0027589 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_076444.1 Gene:Kcna6 / 64358 RGDID:62083 Length:530 Species:Rattus norvegicus


Alignment Length:377 Identity:72/377 - (19%)
Similarity:123/377 - (32%) Gaps:142/377 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   577 PHSGSPATGTAASPLLTYTAA------ATSPQLSAGIKGGSGPAPTAGAPMLVSGAGRGAAALTD 635
            |.|..||.|.|...:|....:      .|.||..|..:|||    ..|:...:|.|.||:....|
  Rat   167 PESSGPARGIAIVSVLVILISIVIFCLETLPQFRADGRGGS----NEGSGTRMSPASRGSHEEED 227

  Fly   636 N--------GFMAAGVCGMGAAAAPLPVTSMGAA--------TTTASSAASTLSALLSANSTGNV 684
            .        |.:.:|..|.|..::   .:::|.:        ..|......|...|:        
  Rat   228 EDEDSYAFPGSIPSGGLGTGGTSS---FSTLGGSFFTDPFFLVETLCIVWFTFELLV-------- 281

  Fly   685 DIMEDEDEQERERLSNCP------HGTPSRVPLIA-SPLSVPQDSGENTTRNTAFNRHTLQPLSR 742
                        |.|.||      ....:.:.|:| .|..:       |.......||..||:| 
  Rat   282 ------------RFSACPSKAAFFRNIMNIIDLVAIFPYFI-------TLGTELVQRHEQQPVS- 326

  Fly   743 KTLLLTRRCHRHASGTLYDSTANNTETSDDEEYMQHGSEQ--------------FVLKKLRYHCD 793
                       ..||                   |:|.:.              |.:.||..|..
  Rat   327 -----------GGSG-------------------QNGQQAMSLAILRVIRLVRVFRIFKLSRHSK 361

  Fly   794 GKDCREAEDSEEEDEKADGRQVPISL-VLLILASYICVGTVIF-------------ALWENWSLV 844
            |....             |:.:..|: .|.:|..::.:|.::|             :|:.  |:.
  Rat   362 GLQIL-------------GKTLQASMRELGLLIFFLFIGVILFSSAVYFAEADDVDSLFP--SIP 411

  Fly   845 DGAYFCFVTLSTIGYGDFVPARSFNGPELQLYACCAYLLLGLVLVAMSFSIL 896
            |..::..||::|:||||..|...  |.:: :.:.||  :.|::.:|:...::
  Rat   412 DAFWWAVVTMTTVGYGDMYPMTV--GGKI-VGSLCA--IAGVLTIALPVPVI 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1688NP_610516.1 Ion_trans_2 177..247 CDD:462301
Ion_trans_2 822..896 CDD:462301 19/86 (22%)
Kcna6NP_076444.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35
BTB_POZ_KCNA6 41..170 CDD:349714 1/2 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..239 10/39 (26%)
Ion_trans 258..469 CDD:459842 47/279 (17%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 361..374 2/25 (8%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 423..428 3/4 (75%)
PDZ-binding. /evidence=ECO:0000255 527..529
Blue background indicates that the domain is not in the aligned region.

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