DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1688 and kcna2b

DIOPT Version :10

Sequence 1:NP_610516.1 Gene:CG1688 / 36005 FlyBaseID:FBgn0027589 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_001104640.1 Gene:kcna2b / 562853 ZFINID:ZDB-GENE-080204-89 Length:495 Species:Danio rerio


Alignment Length:166 Identity:41/166 - (24%)
Similarity:66/166 - (39%) Gaps:19/166 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 GAGLFHEGSASALGHFGYDAGDSQSWSFSEALLYSVTVITTIGHGSLTPRTAAGKLATIFYALVG 230
            |..||    :||:.....|..|||..|..:|..::|..:||:|:|.:.|.|..||:.....|:.|
Zfish   334 GVILF----SSAVYFAEADEPDSQFVSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAG 394

  Fly   231 -------VPLMLMCLSSLGALLADG-LQCTYVRLCCQLQRHQEHRRKSTPGTSTPSAS------S 281
                   ||:::...:.......:| .|..|:.:....:.......|.:...||.|.|      .
Zfish   395 VLTIALPVPVIVSNFNYFYHRETEGEEQAQYLNVTSVPKIDSSEDLKKSRSGSTMSKSDYMEIQE 459

  Fly   282 AANSREKDTDKRSKRRMANCKGCQYDAANSETSLND 317
            |.|:..:|. :....:.|||.....:..|....|.|
Zfish   460 AVNNSNEDF-REENIKTANCTLANTNYVNITKMLTD 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1688NP_610516.1 Ion_trans_2 177..247 CDD:462301 20/76 (26%)
Ion_trans_2 822..896 CDD:462301
kcna2bNP_001104640.1 BTB_POZ 33..159 CDD:453885
Ion_trans 162..416 CDD:459842 24/85 (28%)
Blue background indicates that the domain is not in the aligned region.

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