DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1688 and Sh

DIOPT Version :10

Sequence 1:NP_610516.1 Gene:CG1688 / 36005 FlyBaseID:FBgn0027589 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_728123.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster


Alignment Length:250 Identity:63/250 - (25%)
Similarity:91/250 - (36%) Gaps:74/250 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 DAGDSQSW--SFSEALLYSVTVITTIGHGSLTPRTAAGKLATIFYALVGVPLMLMCLSSLGALLA 246
            :||...|:  |..:|..::|..:||:|:|.:||....||:.....|:.||    :.::....::.
  Fly   418 EAGSENSFFKSIPDAFWWAVVTMTTVGYGDMTPVGVWGKIVGSLCAIAGV----LTIALPVPVIV 478

  Fly   247 DGLQCTYVRLCCQLQRHQEHRRKST-----PGT----STPSASSAANSREKDTDKRSKRRMANCK 302
            ......|.|...|.:...::....|     |||    ...|:.|.::|...|.|           
  Fly   479 SNFNYFYHRETDQEEMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMDLD----------- 532

  Fly   303 GCQYDAANSETSLNDCLEYGQKGKLPPDKKEGDACQLLRNLNPQQHFY--QQQQQQP-------- 357
                |...|...|.: ...|:....|                    |.  |||||||        
  Fly   533 ----DGVESTPGLTE-THPGRSAVAP--------------------FLGAQQQQQQPVASSLSMS 572

  Fly   358 -----QQPDVMLMTTTSGSALLKYAPQQQQLQQQQQLSTATLPRQHHQMQLQQQQ 407
                 |.| :..:|.|.       ..||||.|||||.:.....:|..|.||||||
  Fly   573 IDKQLQHP-LQQLTQTQ-------LYQQQQQQQQQQQNGFKQQQQQTQQQLQQQQ 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1688NP_610516.1 Ion_trans_2 177..247 CDD:462301 17/64 (27%)
Ion_trans_2 822..896 CDD:462301
ShNP_728123.1 BTB_POZ 97..223 CDD:453885
Ion_trans 226..488 CDD:459842 18/73 (25%)
Blue background indicates that the domain is not in the aligned region.

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