DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1688 and Kcna3

DIOPT Version :10

Sequence 1:NP_610516.1 Gene:CG1688 / 36005 FlyBaseID:FBgn0027589 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_062143.3 Gene:Kcna3 / 29731 RGDID:2951 Length:525 Species:Rattus norvegicus


Alignment Length:109 Identity:30/109 - (27%)
Similarity:47/109 - (43%) Gaps:13/109 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 DAGDSQSW--SFSEALLYSVTVITTIGHGSLTPRTAAGKLATIFYALVG-------VPLMLMCLS 239
            :|.|..|.  |..:|..::|..:||:|:|.:.|.|..||:.....|:.|       ||:::...:
  Rat   370 EADDPSSGFNSIPDAFWWAVVTMTTVGYGDMHPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 434

  Fly   240 SLGALLADG---LQCTYVRLCCQLQRHQEHRRKSTPGTSTPSAS 280
            .......:|   .|..:|..|..|....|..||:. ..||.|.|
  Rat   435 YFYHRETEGEEQAQYMHVGSCQHLSSSAEELRKAR-SNSTLSKS 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1688NP_610516.1 Ion_trans_2 177..247 CDD:462301 18/71 (25%)
Ion_trans_2 822..896 CDD:462301
Kcna3NP_062143.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
BTB_POZ 54..180 CDD:453885
Ion_trans 183..440 CDD:459842 18/69 (26%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 394..399 2/4 (50%)
Interaction with KCNE4. /evidence=ECO:0000269|PubMed:27802162 432..525 12/47 (26%)
PDZ-binding. /evidence=ECO:0000269|PubMed:7477295 523..525
Blue background indicates that the domain is not in the aligned region.

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