DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1688 and shaker

DIOPT Version :10

Sequence 1:NP_610516.1 Gene:CG1688 / 36005 FlyBaseID:FBgn0027589 Length:918 Species:Drosophila melanogaster
Sequence 2:XP_310869.6 Gene:shaker / 1272004 VectorBaseID:AGAMI1_004386 Length:643 Species:Anopheles gambiae


Alignment Length:202 Identity:40/202 - (19%)
Similarity:67/202 - (33%) Gaps:71/202 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 DAGDSQSW--SFSEALLYSVTVITTIGHGSLTPRTAAGKLATIFYALVGVPLMLMCLSSLGALLA 246
            :||...|:  |..:|..::|..:||:|:|.:||....||:.....|:.||               
Mosquito   405 EAGSENSFFKSIPDAFWWAVVTMTTVGYGDMTPVGVWGKIVGSLCAIAGV--------------- 454

  Fly   247 DGLQCTYVRLCCQLQRHQEHRRKSTPGTSTPSASSAAN---SREKDTDKRSKRRMANCKGCQY-- 306
                                   .|.....|...|..|   .||.|.::...:...:...|.|  
Mosquito   455 -----------------------LTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYLP 496

  Fly   307 -------------DAANSETSLNDCLE-----YGQKGKLPPDKKEGDACQLLRNLNPQQHFYQQQ 353
                         ::::....|.|.:|     .|::.::.|        .|..:|..:|...|||
Mosquito   497 GTLGQHLKKTSLSESSSDMMDLEDGVETTPGLLGEQNRMVP--------FLGAHLTDKQQLQQQQ 553

  Fly   354 QQQPQQP 360
            |...:||
Mosquito   554 QNCCKQP 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1688NP_610516.1 Ion_trans_2 177..247 CDD:462301 17/64 (27%)
Ion_trans_2 822..896 CDD:462301
shakerXP_310869.6 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.