DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1688 and kcna6

DIOPT Version :10

Sequence 1:NP_610516.1 Gene:CG1688 / 36005 FlyBaseID:FBgn0027589 Length:918 Species:Drosophila melanogaster
Sequence 2:XP_004912861.1 Gene:kcna6 / 100492986 XenbaseID:XB-GENE-1010669 Length:481 Species:Xenopus tropicalis


Alignment Length:162 Identity:39/162 - (24%)
Similarity:61/162 - (37%) Gaps:34/162 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 GAGLFHEGSASALGHFGYDAGDSQSWSFSEALLYSVTVITTIGHGSLTPRTAAGKLATIFYALVG 230
            |..||    :||:.....|..:|...|..:|..::|..:||:|:|.:.|.|..||:.....|:.|
 Frog   332 GVILF----SSAVYFAETDDPESLFTSIPDAFWWAVVSMTTVGYGDMYPMTIGGKIVGSLCAIAG 392

  Fly   231 VPLMLMCLSSLGALLADGLQCTYVRLCCQLQRHQEHRRKS-----TPGTSTPSASSAANSREKDT 290
            |    :.::....::.......|       .|..:|..:|     |.|....|......|..|.:
 Frog   393 V----LTIALPVPVIVSNFNYFY-------HRETDHEEQSQYTHVTCGQQPSSYGDLKKSESKQS 446

  Fly   291 DKRSKRRMANCKGCQYDAANSETSLNDCLEYG 322
            ..||            |...|| .|:| :.||
 Frog   447 FNRS------------DYMESE-ELDD-MRYG 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1688NP_610516.1 Ion_trans_2 177..247 CDD:462301 17/69 (25%)
Ion_trans_2 822..896 CDD:462301
kcna6XP_004912861.1 BTB_POZ 35..161 CDD:453885
Ion_trans 206..414 CDD:459842 22/96 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.