DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1688 and kcna1

DIOPT Version :10

Sequence 1:NP_610516.1 Gene:CG1688 / 36005 FlyBaseID:FBgn0027589 Length:918 Species:Drosophila melanogaster
Sequence 2:XP_004912857.1 Gene:kcna1 / 100492822 XenbaseID:XB-GENE-991584 Length:489 Species:Xenopus tropicalis


Alignment Length:265 Identity:52/265 - (19%)
Similarity:97/265 - (36%) Gaps:56/265 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 VLLVIGYSVLGGLLFPLLEAPQDISKSAAIAKSREDCLRELWIITEKLNVLYERNWTMLVHEQLR 144
            ::.:|.|.:..|......|.||...::.::|     .||.:.::.           ...:.:..|
 Frog   253 IVAIIPYFITLGTEMAEQEGPQKGEQATSLA-----ILRVIRLVR-----------VFRIFKLSR 301

  Fly   145 RFEG-SIVAATRQGSAGSSG------GGGAGLFHEGSASALGHFGYDAGDSQSWSFSEALLYSVT 202
            ..:| .|:..|.:.|....|      ..|..||    :||:.....:..:|...|..:|..::|.
 Frog   302 HSKGLQILGQTLKASMRELGLLIFFLFIGVILF----SSAVYFAEAEEDESHFASIPDAFWWAVV 362

  Fly   203 VITTIGHGSLTPRTAAGKLATIFYALVGVPLMLMCLSSLGALLADGLQCTYVRLCCQLQRHQEHR 267
            .:||:|:|.:.|.|..||:.....|:.||    :.::....::.......|.|     :...|.:
 Frog   363 SMTTVGYGDMYPVTIGGKIVGSLCAIAGV----LTIALPVPVIVSNFNYFYHR-----ETEGEEQ 418

  Fly   268 RK----STPGTSTPS----ASSAANSREK------------DTDKRSKRRMANCKGCQYDAANSE 312
            .:    |||..::.|    .||:..|:.:            |..:.:..|..||.....:..|..
 Frog   419 AQLLHVSTPNLASDSDLSRRSSSTMSKSEYMEIEEDLNNSIDNFREANIRTGNCTIANQNCVNKS 483

  Fly   313 TSLND 317
            ..|.|
 Frog   484 KLLTD 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1688NP_610516.1 Ion_trans_2 177..247 CDD:462301 16/69 (23%)
Ion_trans_2 822..896 CDD:462301
kcna1XP_004912857.1 BTB_POZ 34..160 CDD:453885
Ion_trans 163..412 CDD:459842 37/187 (20%)
Blue background indicates that the domain is not in the aligned region.

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