DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1688 and kcnd3

DIOPT Version :10

Sequence 1:NP_610516.1 Gene:CG1688 / 36005 FlyBaseID:FBgn0027589 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_001096411.1 Gene:kcnd3 / 100125015 XenbaseID:XB-GENE-5867971 Length:653 Species:Xenopus tropicalis


Alignment Length:535 Identity:115/535 - (21%)
Similarity:177/535 - (33%) Gaps:164/535 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 CGSEMGAKTTASLTAKPRSSLRRCCGHLLKLLF---STPGLVLLVIGYSVLGGLLFPLLEAPQDI 103
            ||:..|.|...             ||....:.|   .|..:::..:.|      |..|..||   
 Frog   207 CGTVPGNKELP-------------CGERYDVAFFCLDTACVMIFTVEY------LLRLFAAP--- 249

  Fly   104 SKSAAIAKSREDCLRELWIITEKLNVL-YERNWTMLVHEQ-------LRRFEGSIVAATRQGSAG 160
                    ||...:|.:..|.:.:.:: |.....|..:|.       ||.|.   |....:.|..
 Frog   250 --------SRYRFMRSVMSIIDVVAIMPYYIGLVMTNNEDVSGAFVTLRVFR---VFRIFKFSRH 303

  Fly   161 SSGGGGAGLFHEGSASALGH----------------FGYDAGDSQS--WSFSEALLYSVTVITTI 207
            |.|....|...:..||.||.                |..:.|.|.|  .|...:..|::..:||:
 Frog   304 SQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSSSKFTSIPASFWYTIVTMTTL 368

  Fly   208 GHGSLTPRTAAGKLATIFYALVGVPLMLMCLSSLGALLADGLQCTYVRLCCQLQRHQEHR----- 267
            |:|.:.|:|.|||:.....:|.||.::        ||....:...:.|:..|.||..:.|     
 Frog   369 GYGDMVPKTIAGKIFGSICSLSGVLVI--------ALPVPVIVSNFSRIYHQNQRADKRRAQKKA 425

  Fly   268 -----RKSTPGTSTPSASSAANSREKDTDKRSKRRMANCKGCQYDAANSETSLNDCLEYGQKGKL 327
                 |.:..|:||....|..|.                            .||:.||.....:.
 Frog   426 RLARIRVAKTGSSTAYLHSKRNG----------------------------LLNEALELMGSTEE 462

  Fly   328 PPDKKEGDACQLLRNLNPQQHFYQQQQQQPQQPDVMLMTTTSGSALLKYAPQQQQLQQQQQLSTA 392
            |   ..|.:..|:.:    ||.:.          :..:..|:|   |.|      |.....||..
 Frog   463 P---HIGKSASLIES----QHHHL----------LHCLEKTTG---LSY------LVDDPLLSVR 501

  Fly   393 TLPRQHHQMQLQQQQQQLQQNFVAVPSSMLRMPLTVPPNCYAPATATIYFPFGHAPSAPGSPAHN 457
            |...::|:.   ..:|..:||  ...|||...|.:..|:..:          .|..:.......|
 Frog   502 TSTMKNHEF---MDEQMFEQN--CRESSMQNYPSSRSPSLSS----------NHGLTTSCCSRRN 551

  Fly   458 QAHPTQNPNGNALGNTTLGSQPLVKYHTIHLQPASGKHRVLASGLQDATAVNLVTASE------A 516
            : ..|..||.|.........|.|   .|||:| .|.:..:.||    .:::||.:..|      |
 Frog   552 K-KTTHLPNSNVPATRLRSMQEL---STIHIQ-CSDQPSLTAS----RSSLNLKSDDELRSNCKA 607

  Fly   517 STSTLEAITLPPPPA 531
            |..|...|::|.|||
 Frog   608 SQITTAIISIPTPPA 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1688NP_610516.1 Ion_trans_2 177..247 CDD:462301 22/87 (25%)
Ion_trans_2 822..896 CDD:462301
kcnd3NP_001096411.1 BTB_POZ_KCND3 6..143 CDD:349726
Ion_trans 186..412 CDD:459842 53/245 (22%)
DUF3399 468..563 CDD:463381 26/133 (20%)
Blue background indicates that the domain is not in the aligned region.

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