DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trpl and trpn1

DIOPT Version :9

Sequence 1:NP_476895.1 Gene:trpl / 36003 FlyBaseID:FBgn0005614 Length:1124 Species:Drosophila melanogaster
Sequence 2:NP_899192.1 Gene:trpn1 / 368273 ZFINID:ZDB-GENE-030728-7 Length:1614 Species:Danio rerio


Alignment Length:747 Identity:170/747 - (22%)
Similarity:269/747 - (36%) Gaps:181/747 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 LAVERGDMPNVRRILQK--ALRHQHININCMDPLGRRALTLAIDNENLEMVELLVVMGVETKDAL 109
            ||.:.|....|..:|.:  :|.||      .|..||.||.||..:.:::||.:|:..|.|     
Zfish   939 LAAQSGHTAVVGLLLSRSSSLLHQ------ADRRGRSALHLAAAHGHVDMVRVLLGQGAE----- 992

  Fly   110 LHAINAEFVEAVELLLEHEELIYKEGEPYSWQKVDINTAMFAPDITPLMLAAHKNNFEILRILLD 174
                           :.|.::       ..|              |.|..||.....|:|..|::
Zfish   993 ---------------INHTDM-------SGW--------------TALHYAAEAGCLEVLLFLVE 1021

  Fly   175 RGAAVPVPHDIRCGCEEC----------VRLTAEDSLRHSLSR-VNIYRALCSPS-----LICLT 223
            .||:         .|.||          .:...|.::...|.| .|..|.|....     ::|..
Zfish  1022 SGAS---------ACAECHGGRTPLQYAAQQNHESAVIFLLRREKNTLRLLDDKKFIFNLMVCGR 1077

  Fly   224 SND-------------PIITAFQLSWELRNLALTEQECKSEYMDLRRQCQKFAVDLLDQTRTSNE 275
            .||             |:.||.:||..|...||.|:|...:.......|:..|.|||..:.::..
Zfish  1078 MNDNLSLEELVLHTSAPLDTAVRLSRALTLCALREKERSVDLQAAAHHCELMASDLLSLSASAGG 1142

  Fly   276 LAIILNYDPQMSSYEPGDRMSLTRLVQAISYKQKKFVAHSNIQQLLSSIWYDGLPGFRRKSIVDK 340
            ..  ....|.:.:.   |...|:.|...|..:||..|:...:|..|:.:|..||.....|.::  
Zfish  1143 QG--AGAGPILRAL---DHRGLSVLDCLIEGRQKGVVSQPAVQTYLTEVWCGGLQWDSWKILL-- 1200

  Fly   341 VICIAQVAVLFPLYCLIYMCAPNC------RTGQLMRKPFMKFLIHASSYLFF--LFILILVSQR 397
                        |:|.:.:|.|..      .|......|.:||:.|..|::|.  ||||.:|...
Zfish  1201 ------------LFCCLLLCPPLWLLLALPLTHSFNTIPIVKFMSHLVSHIFLLTLFILTIVYPP 1253

  Fly   398 ADDDFVRIFGTTRMKKELAEQELRQRGQTPSKLELIVVMYVIGFVWEEVQEIFAVGMKSYLRNMW 462
            .                   ..|.|....||..|.::::::.|.:   |.|:...|.::.|  .|
Zfish  1254 V-------------------SPLSQARLMPSWSECLLLIWLCGML---VSELTFPGERTGL--AW 1294

  Fly   463 NFIDFLRNSLYVSVMCLRAFAYIQQATEIARDPQMAYIPREKWHDFDPQLIAEG-LFAAANVFSA 526
              |..|......:.:.....|...|           :.|....|    .|.|.. |.|.|.....
Zfish  1295 --IRLLLLGFSAAALLCHLLAVFTQ-----------WWPPTHLH----CLFARNVLLAVAMTLGF 1342

  Fly   527 LKLVHLFSINPHLGPLQISLGRMVIDIVKFFFIYTLVLFAFACGLNQLLWYFAALEKSKC---YV 588
            ::|:...:.:...||..|.:..::.|:.:|..|..|...||...|..|.......|:...   ..
Zfish  1343 IQLLEFLTFHHLFGPWAIIIRDLIKDLCRFAVILMLFHTAFTLSLTALCQPLYPQEQHNTTTEVT 1407

  Fly   589 LPGGEADWGSHGDSCMKWRRFGNLFESSQSLFWASFGMVGLDDF-ELSGIKSYTRFWGLLMFGSY 652
            :||.                    ...|..||:|.||:...|.. ::......|.....::||.|
Zfish  1408 VPGP--------------------LNMSVLLFFALFGLTEPDKIPDVDRSPPATAVLAKMVFGVY 1452

  Fly   653 SVINVIVLLNLLIAMMSNSYAMIDEHSDTEWKFARTKLWMSYFEDSATLPPPFNVLPSVKWVIRI 717
            .|:..|||:||||||||::|..|...|||||||.|..|.......|. :|.|||:..::.:.:::
Zfish  1453 LVVTFIVLINLLIAMMSDTYQRIQAQSDTEWKFGRAVLIRDMSRKSG-IPSPFNLFTNLFYSVKV 1516

  Fly   718 FRKSSKTIDRQRSKKRKEQEQFSEYDNIMRSL 749
            ..|.:..:....|:....:::.:|..:..|||
Zfish  1517 VCKRAGKMCSSESRDVMNEDEDAEGLSESRSL 1548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trplNP_476895.1 trp 48..784 CDD:273311 169/746 (23%)
ANK 48..195 CDD:238125 33/158 (21%)
ANK repeat 78..114 CDD:293786 11/35 (31%)
ANK repeat 134..177 CDD:293786 8/42 (19%)
TRP_2 187..246 CDD:285535 20/87 (23%)
DUF2031 <706..>805 CDD:299055 7/44 (16%)
trpn1NP_899192.1 ANK repeat 47..78 CDD:293786
Ank_4 48..101 CDD:290365
ANK 77..239 CDD:238125
ANK repeat 80..111 CDD:293786
ANK repeat 113..148 CDD:293786
ANK repeat 150..184 CDD:293786
Ank_2 155..250 CDD:289560
ANK 182..300 CDD:238125
ANK repeat 186..217 CDD:293786
ANK repeat 219..250 CDD:293786
ANK 247..373 CDD:238125
Ank_4 254..300 CDD:290365
ANK repeat 286..317 CDD:293786
Ank_2 291..382 CDD:289560
ANK repeat 319..350 CDD:293786
ANK 347..474 CDD:238125
ANK repeat 352..382 CDD:293786
Ank_4 389..441 CDD:290365
ANK repeat 420..450 CDD:293786
Ank_2 425..535 CDD:289560
ANK repeat 496..536 CDD:293786
ANK 539..665 CDD:238125
ANK repeat 540..576 CDD:293786
Ank_2 544..641 CDD:289560
ANK repeat 578..609 CDD:293786
ANK 606..732 CDD:238125
ANK repeat 611..642 CDD:293786
Ank_2 616..709 CDD:289560
ANK repeat 644..674 CDD:293786
ANK repeat 678..709 CDD:293786
Ank_2 683..812 CDD:289560
ANK repeat 745..812 CDD:293786
ANK repeat 749..780 CDD:293786
ANK 781..918 CDD:238125
Ank_4 815..865 CDD:290365
ANK repeat 847..895 CDD:293786
ANK 896..1053 CDD:238125 35/169 (21%)
ANK repeat 897..964 CDD:293786 8/30 (27%)
Ank_2 902..997 CDD:289560 21/83 (25%)
ANK repeat 966..997 CDD:293786 12/50 (24%)
Ank_2 971..1058 CDD:289560 25/136 (18%)
ANK repeat 999..1030 CDD:293786 11/53 (21%)
Ion_trans <1342..1480 CDD:278921 40/157 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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