DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trpl and Trpc7

DIOPT Version :9

Sequence 1:NP_476895.1 Gene:trpl / 36003 FlyBaseID:FBgn0005614 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_017455952.1 Gene:Trpc7 / 282822 RGDID:628820 Length:904 Species:Rattus norvegicus


Alignment Length:819 Identity:269/819 - (32%)
Similarity:413/819 - (50%) Gaps:163/819 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 EEKKFLLAVERGDMPNVRRILQKALRHQHININCMDPLGRRALTLAIDNENLEMVELLVVMG--V 103
            ||::||.:.|.|::|.||::|:::   :.:|.||:|.:|:.||.||:.||:||:.|||:...  .
  Rat   140 EEERFLDSAEYGNIPVVRKMLEES---KTLNFNCVDYMGQNALQLAVGNEHLEVTELLLKKENLA 201

  Fly   104 ETKDALLHAINAEFVEAVELLLEH---------------EELIYKEGEPYSWQKVDINTAMFAPD 153
            ...||||.||:..:|..||.:|.|               :||  ::.:.|::   |.:...|:.|
  Rat   202 RVGDALLLAISKGYVRIVEAILSHPAFAQGQRLTLSPLEQEL--RDDDFYAY---DEDGTRFSHD 261

  Fly   154 ITPLMLAAHKNNFEILRILLDRGAAVPVPHDIRCGCEECVRLTAEDSLRHSLSRVNIYRALCSPS 218
            |||::||||...:||:.|||.:||.:..|||..|.|.||.....:||..||.||:|.|:.|.|.:
  Rat   262 ITPIILAAHCQEYEIVHILLLKGARIERPHDYFCKCNECTEKQRKDSFSHSRSRMNAYKGLASAA 326

  Fly   219 LICLTSNDPIITAFQLSWELRNLALTEQECKSEYMDLRRQCQKFAVDLLDQTRTSNELAIILNYD 283
            .:.|:|.||::||.:||.||..||..|.|.|::|..|..||:.|.|.:||..|.:.|:..|||.|
  Rat   327 YLSLSSEDPVLTALELSNELARLANIETEFKNDYRKLSMQCKDFVVGVLDLCRDTEEVEAILNGD 391

  Fly   284 PQMSSYEPGDRMSLTRLVQAISYKQKKFVAHSNIQQLLSSIWYDGLPGFRRKSIVDKVICIAQVA 348
            ..:..:....|.||:|:..||.|:.||.                                     
  Rat   392 VNLQVWSDHHRPSLSRIKLAIKYEVKKL------------------------------------- 419

  Fly   349 VLFPLYCLIYMCAPNCRTGQLMRKPFMKFLIHASSYLFFLFILILVSQRADDDFVRIFGTTRMKK 413
                              |:.:|.|||||:.||.|:..||.:|::   .|.|   |..|...:..
  Rat   420 ------------------GRTLRSPFMKFVAHAVSFTIFLGLLVV---NASD---RFEGVKTLPN 460

  Fly   414 E----LAEQELRQRGQTPSKLELIVVMYVIGFVWEEVQEIFAVGMKSYLRNMWNFIDFLRNSLYV 474
            |    ..:|..|.:....|..|::::.:|:|.:|.|.:||:..|.:.|:.::||.:||...|::|
  Rat   461 ETFTDYPKQIFRVKTTQFSWTEMLIMKWVLGMIWSECKEIWEEGPREYVLHLWNLLDFGMLSVFV 525

  Fly   475 SVMCLRAFA-------------YIQQAT--EIARDPQMAYI--PREKWHDFDPQLIAEGLFAAAN 522
            :....|..|             |:|..|  .::..|::||.  .|:||...|||:|:|||:|.|.
  Rat   526 ASFTARFMAFLKASEAQLYVDQYVQDVTLHNVSLPPEVAYFTYARDKWWPSDPQIISEGLYAIAV 590

  Fly   523 VFSALKLVHLFSINPHLGPLQISLGRMVIDIVKFFFIYTLVLFAFACGLNQLLWYFAALEKSKCY 587
            |.|..::.::...|...|||||||||.|.||.||..|:.:|..||..|:..|..|:...:.:.. 
  Rat   591 VLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNLYSYYRGAKYNPA- 654

  Fly   588 VLPGGEADWGSHGDSCMKWRRFGNLFESSQSLFWASFGMVGLDDFELSGIKSYTRFWGLLMFGSY 652
                                 |..:.||.::|||:.||:..:....|.....:....|.:::|.|
  Rat   655 ---------------------FTTVEESFKTLFWSIFGLSEVISVVLKYDHKFIENIGYVLYGVY 698

  Fly   653 SVINVIVLLNLLIAMMSNSYAMIDEHSDTEWKFARTKLWMSYFEDSATLPPPFNVLPSVK----- 712
            :|..|:||||:||||::|||..|:|.:|.||||||.|||:|||::..|||.|||::||.|     
  Rat   699 NVTMVVVLLNMLIAMINNSYQEIEEDADVEWKFARAKLWLSYFDEGRTLPAPFNLVPSPKSFYYL 763

  Fly   713 ------WVIRIFRKSSKTIDRQ------RSKKRKEQEQ--------------FSE---YDNIMRS 748
                  .:|::.:..:|..:..      .||.||.:.|              ||:   |..||:.
  Rat   764 IMRIKMCLIKLCKSKAKRCENDLEMGMLNSKFRKTRYQAGMRNSENLTANSTFSKPTRYQKIMKR 828

  Fly   749 LVWRYVAAMHRKFENNPVSEDDINEVKSEINTMRYEMLE 787
            |:.|||.......||:.|:|.::.|:|.:|:::|||:||
  Rat   829 LIKRYVLKAQVDRENDEVNEGELKEIKQDISSLRYELLE 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trplNP_476895.1 trp 48..784 CDD:273311 261/807 (32%)
ANK 48..195 CDD:238125 60/163 (37%)
ANK repeat 78..114 CDD:293786 17/37 (46%)
ANK repeat 134..177 CDD:293786 16/42 (38%)
TRP_2 187..246 CDD:285535 26/58 (45%)
DUF2031 <706..>805 CDD:299055 32/116 (28%)
Trpc7XP_017455952.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3609
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.770

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