Protein Alignment trpl and Xndc1

DIOPT Version :10

• Sequence 1: NP_476895.1
• Gene: trpl / 36003
• FlyBaseID: FBgn0005614
• Length: 1124
• Species: Drosophila melanogaster
• Sequence 2: NP_001316819.1
• Gene: Xndc1 / 102549471
• RGDID: 7692537
• Length: 407
• Species: Rattus norvegicus
• Alignment Length: 272
• Identity: 50/272 - (18%)
• Similarity: 96/272 - (35%)
• Gaps: 90/272 - (33%)

  Fly   791 NSGMDVSSANKKERQPRPRRIKVW--ERRLMKGFQVAPVQNGCELDAFGNVNGQGEMQEIKVESI 853
            :||::.:|::|.|..|.|     |  ...:.:.|...|..:..|:.|.     :|.:::::...:
  Rat   169 SSGLNQNSSDKLESDPSP-----WLTNPSIRRTFFPDPQTSTKEISAL-----KGMLKQLQPGPL 223

  Fly   854 PSKPAKETAKERFQRVARTVLLQSTTHKWNVVLRAAKDSQIG------------RCTKNERKSLQ 906
                         .|.||.||  |..||.......:.::..|            |..:..||:..
  Rat   224 -------------GRAARMVL--SAAHKAPPASVVSPNNSHGEPDSSHPERAEPRAEEPNRKNNA 273

  Fly   907 NLG--RAIEEAKRLIMLNPGCPSGR---ESPIRIEFEDEKT----------------STLLELLN 950
            :.|  |.::|.:|.:..:...|:.|   .:..|.:....|:                |..:|.|.
  Rat   274 SRGKRRKVQEQRRPLSSSSSQPNRRATGRTKQRQQRPQAKSDGSGVQATGQCPICTGSFSIEALP 338

  Fly   951 QISAEISDSEKPKIRPIWRPPLKTVPARAMAANNTRSLTAPELKISRKSSPAPTPTPTPGVSHTA 1015
            :.:|...:|..|:            ||...:.:::.|       :...|||..:|.|:..|
  Rat   339 RHAATCGESSPPQ------------PASPTSLSSSES-------VLWVSSPESSPPPSSWV---- 380

  Fly  1016 LSQFRNRELPLC 1027
                   :.|:|
  Rat   381 -------QCPIC 385

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
trpl	NP_476895.1	TRPV	48..784	CDD:454755
		ANK repeat	78..114	CDD:293786
		ANK repeat	134..177	CDD:293786
		TRP_CaM_bind1	798..883	CDD:467881	19/86 (22%)
		PHA03247	<961..1069	CDD:223021	12/67 (18%)
Xndc1	NP_001316819.1	XRCC1_N	1..150	CDD:460356