DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trpl and trpc2

DIOPT Version :9

Sequence 1:NP_476895.1 Gene:trpl / 36003 FlyBaseID:FBgn0005614 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_031752130.1 Gene:trpc2 / 100492026 XenbaseID:XB-GENE-6258978 Length:751 Species:Xenopus tropicalis


Alignment Length:777 Identity:224/777 - (28%)
Similarity:358/777 - (46%) Gaps:133/777 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 AVERGDMPNVRRILQKA---LRHQHININCMDPLGRRALTLAIDNENLEMVELLVVMGV----ET 105
            |:..|.:..|:::||..   ||...   :..|...|.||.|||...|.|:::.|:....    :.
 Frog    26 AIHDGSLLQVQQLLQVGDGMLRQLD---DTEDRSWREALNLAIRTGNEEIMKTLLHCVKFDFRQI 87

  Fly   106 KDALLHAINAEFVEAVELL---LEHEELIYKEGEPYSWQKVD--INTAMFAPDITPLMLAAHKNN 165
            .:|||.|::......|::|   |:.|:.|..:.:.:|....|  |:.:.|||.:|||.||..|:.
 Frog    88 HEALLVAVDTNQPHVVKMLLDRLDQEKGIKMDIKSFSLAFFDNSIDNSRFAPGVTPLTLACEKDL 152

  Fly   166 FEILRILLDRGAAVPVPHDIRCGCEECVRLTAEDSLRHSLSRVNIYRALCSPSLICLTSNDPIIT 230
            :||:.:|:.:|..:..||.|.|.|.||......|.|:.||||:|.|:.:.|.:.:.:.|.|.:::
 Frog   153 YEIVEMLMKKGHVITTPHKISCTCMECSNGRKYDLLKFSLSRINTYKGIASRAYLSIASEDAMLS 217

  Fly   231 AFQLSWELRNLALTEQECKSEYMDLRRQCQKFAVDLLDQTRTSNELAIILNYDPQMSSYEPGDRM 295
            ||:||.||:.|:..|.|.|.||:.|....|:|||:||...|..:|:..:||.....|..|..|..
 Frog   218 AFKLSRELKRLSRKEPEFKPEYLSLENLSQEFAVELLGMCRNQSEVTAVLNDCGDDSDEEELDNQ 282

  Fly   296 -------SLTRLVQAISYKQKKFVAHSNIQQLLSSIWYDGLPGFRRKSIVDKVICIAQVAVLFPL 353
                   :|.||..|:.:.||:||||...||:|||||...|.|:|..:.:.|:.....:.|..||
 Frog   283 AFEEGIPNLARLRLAVHHNQKRFVAHPICQQVLSSIWSGKLSGWRGSNTIWKLFIACTIFVSMPL 347

  Fly   354 YCLIYMCAPNCRTGQLMRKPFMKFLIHASSYLFFLFILILVS----QRADDDFVRIFGTTRMKKE 414
            .|::|..||..:.|:.::.|.:|||:|::|||:||..|:|.|    ||.|     |:        
 Frog   348 LCMVYWLAPKSKVGKTLKIPVIKFLLHSASYLWFLIFLLLESLIMEQRHD-----IY-------- 399

  Fly   415 LAEQELRQRGQTPSKLELIVVMYVIGFVWEEVQEIFAVGMKSYLRNMWNFIDFLRNSLYVSVMCL 479
                |.|.:....:.|.::   :|.||:|.|.:|::..|::||..:.|||:|.:..|:|::...|
 Frog   400 ----EGRSQAIWQNSLHMV---WVAGFLWHECKEVWIEGLRSYFLDWWNFLDIVTISMYLASFSL 457

  Fly   480 RAFAYIQQATEIARDPQ------MAYIPREKWHDFDPQLIAEGLFAAANVFSALKLVHLFSINPH 538
            |...:::........|.      .....|.:|:..|||.|||.|||..::.|..:|.::...:..
 Frog   458 RILVFLKGYLACLEQPDSDVCFYFTKSERNEWNTEDPQFIAEVLFAVTSMLSFTRLAYILPAHET 522

  Fly   539 LGPLQISLGRMVIDIVKFFFIYTLVLFAFACGLNQLLWYFAALEKSK-------CYVLPGGEADW 596
            ||.||||:|:|:.|:::|.||..::|.||.||||.:...:|..||..       |...|..:.|:
 Frog   523 LGTLQISIGKMIDDMIRFMFILMIILTAFLCGLNNIYVNYADSEKLGKRSCRFFCCYKPRKKQDY 587

  Fly   597 GSHGDSCMKWRRFGNLFESSQSLFWASFGMVGLDDFELSGIKSYTRFWGLLMFGSYSVINVIVLL 661
            ..  .|.:..|..|.:....::          .:.:.|..||                       
 Frog   588 PP--ISTISNRAVGGVMSPGEN----------RESYRLQVIK----------------------- 617

  Fly   662 NLLIAMMSNSYAMIDEHSDTEWKFARTKLWMSYFEDSATLPPPFNVLPSVKWVIRI--------- 717
                       |::..:.||    ||.:     ||:|........:....|.|||:         
 Frog   618 -----------ALVQRYIDT----ARRE-----FEESRRKDLGNRITELNKNVIRLQSEVKNLRR 662

  Fly   718 ---------FRKSSKTIDRQRSKKRKEQEQFSEYDNIMRSLVWRYVAAMHRKFENNPVSEDD 770
                     ..||::.|..|...|.|...|..:.::|..|.....| .:|:.....||.:||
 Frog   663 SVGDNSGSATNKSNENILSQYIMKVKGSFQNYDQESISSSKESPEV-TVHQDSNQGPVPDDD 723

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trplNP_476895.1 trp 48..784 CDD:273311 224/777 (29%)
ANK 48..195 CDD:238125 49/158 (31%)
ANK repeat 78..114 CDD:293786 13/39 (33%)
ANK repeat 134..177 CDD:293786 15/44 (34%)
TRP_2 187..246 CDD:285535 22/58 (38%)
DUF2031 <706..>805 CDD:299055 19/83 (23%)
trpc2XP_031752130.1 trp 51..>582 CDD:273311 182/550 (33%)
ANK repeat 84..133 CDD:293786 11/48 (23%)
ANK repeat 135..164 CDD:293786 12/28 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000660
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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