DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trpl and trpc4

DIOPT Version :9

Sequence 1:NP_476895.1 Gene:trpl / 36003 FlyBaseID:FBgn0005614 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_002939629.3 Gene:trpc4 / 100485338 XenbaseID:XB-GENE-1013618 Length:969 Species:Xenopus tropicalis


Alignment Length:1017 Identity:395/1017 - (38%)
Similarity:568/1017 - (55%) Gaps:149/1017 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 EKKFLLAVERGDMPNVRRILQKALRHQHININCMDPLGRRALTLAIDNENLEMVELLVVMGVETK 106
            ||.:|.|||:||..:|::.|::|..:..|||||:|||||.||.:||:|||||::|||:...|...
 Frog    33 EKAYLSAVEKGDYASVKQALEEAEIYFKININCIDPLGRTALLIAIENENLELIELLLSYNVYVG 97

  Fly   107 DALLHAINAEFVEAVELLLEHEELIYKEGEPYSWQKV-----DINTAMFAPDITPLMLAAHKNNF 166
            |||||||..|.|.||||||.|:       :|...::|     |...:.|.|||||::||||.||:
 Frog    98 DALLHAIRKEVVGAVELLLNHK-------KPSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNY 155

  Fly   167 EILRILLDRGAAVPVPHDIRCGCEECVRLTAEDSLRHSLSRVNIYRALCSPSLICLTSNDPIITA 231
            ||::.|:.:|.:||.||::||.|.|||..:..||||||.||:||||||.|||||.|:|.||.:||
 Frog   156 EIIKHLVQKGVSVPRPHEVRCNCVECVSGSDVDSLRHSRSRLNIYRALSSPSLIALSSEDPFLTA 220

  Fly   232 FQLSWELRNLALTEQECKSEYMDLRRQCQKFAVDLLDQTRTSNELAIILNYDPQMSSYEPGDRMS 296
            |||||||:.|:..|.|.||||.:|..||::||.|||||||:|.||.|||||.......:..:...
 Frog   221 FQLSWELQELSKVENEFKSEYEELSSQCKQFAKDLLDQTRSSRELEIILNYRDDGGLLDDSNGND 285

  Fly   297 LTRLVQAISYKQKKFVAHSNIQQLLSSIWYDGLPGFRRKSIVDKVICIAQVAVLFPLYCLIYMCA 361
            |.||..||.|:||:|||..|.||||:|.|||..||:||:..|.|::....|.:|||.:...|:.|
 Frog   286 LARLKLAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRHWVVKMVTCVIVGLLFPAFSCCYLIA 350

  Fly   362 PNCRTGQLMRKPFMKFLIHASSYLFFLFILILVSQRADDDFVRIFGTTRMKKELAEQELRQRGQT 426
            |....|..:||||:||:.|.:|||.|||:|:|.||..:            |.|..:      |..
 Frog   351 PKSTFGLFIRKPFIKFICHTASYLTFLFLLLLASQNIN------------KTESLQ------GPA 397

  Fly   427 PSKLELIVVMYVIGFVWEEVQEIFAVGMKSYLRNMWNFIDFLRNSLYVSVMCLRAFAYIQQATEI 491
            |:.:|.:::.:|:||:|.|:::::..|.:.|:.:.||.:||:.||||::.:.|:..||::...: 
 Frog   398 PTIVEWMILPWVLGFIWGEIKQMWDGGFQDYIHDWWNLMDFVMNSLYLATISLKIVAYVKFHGQ- 461

  Fly   492 ARDPQMAYIPREKWHDFDPQLIAEGLFAAANVFSALKLVHLFSINPHLGPLQISLGRMVIDIVKF 556
             |:       |.:|..|.|.|:||.:||.||:||:|:|:.||:.|.||||||||||||::||:||
 Frog   462 -RN-------RAEWEMFHPTLVAEAVFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKF 518

  Fly   557 FFIYTLVLFAFACGLNQLLWYFAALEKSKCYVLPGGEADWGSHGDSCMKWRR-FGNLFESSQSLF 620
            .|||.|||.|||.|||||.:|:.|..||.           |..|..|.|... |..|||:.||||
 Frog   519 LFIYCLVLLAFANGLNQLYFYYEADAKSS-----------GCKGIRCEKQNNAFSTLFETLQSLF 572

  Fly   621 WASFGMVGLDDFELSGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIDEHSDTEWKF 685
            |:.||::.|....:.....:|.|.|..|||:|:||:::||||:|||||:|||.:|.:|:|.||||
 Frog   573 WSIFGLINLYVTNVDPKHEFTEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKF 637

  Fly   686 ARTKLWMSYFEDSATLPPPFNVLPS-------VKWVIRIFRKSSKTIDRQRSKKRKEQ------- 736
            |||||||||||:..|||.|||::||       :||:       .|.|.:::.|::.|.       
 Frog   638 ARTKLWMSYFEEGGTLPTPFNIIPSPKSLWYLIKWI-------RKQICKKKMKRKPESFGAIGRR 695

  Fly   737 -----EQFSEYDNIMRSLVWRYVAAMHR--KFENNPVSEDDINEVKSEINTMRYEMLEIFENSGM 794
                 .:.:.|..:|::||.||||||.|  |.|.. ::|::..|:|.:|::.|:|:|.:.:.:..
 Frog   696 AADNLRRHNHYQEVMKNLVKRYVAAMIRDAKTEEG-LTEENFKELKQDISSFRFEVLGLLKGNKF 759

  Fly   795 DVSSANKKERQPRPRRIKVWERRLMKGFQVAPVQNGCELDAFGNVNGQGEMQEIKVESIPSKPAK 859
            ::.|:...                                     ||.|::||.:.:|...:...
 Frog   760 NIQSSKMN-------------------------------------NGIGDIQETEEKSKIKEKRS 787

  Fly   860 ETAKERFQRVARTVLLQSTTHKWNVVLRAAKDSQIGRCTKNER--------KSLQNLGRAIEEAK 916
            .|.|:.|.....|.::    |..:.|:.    |.:.....|..        |..|.....:.:.|
 Frog   788 RTQKKNFSLFDITTMI----HPKSAVIA----SDVHNSVSNGSALLASELVKEKQRKNSFVTDIK 844

  Fly   917 RLIMLNPGCPSGRESPIRIEFEDEKT--STLLELLNQISAEISDS--------EKPKIRPIWRPP 971
            ...:.:....|....||      .||  |...|:.||...|:.|:        .:|....:....
 Frog   845 SFGLFHKRSKSNFSDPI------SKTIYSVSEEVANQQDMELGDNTTDLQVKESEPASCELNVNK 903

  Fly   972 LKTVPARAMAANNTRSLTAPELKISRKSSPAPTPTPTPGVSH 1013
            |....|.:.::.||..:.:|:...|:.||.|.....|..:.|
 Frog   904 LTEQYALSPSSVNTSEIPSPQPSDSQHSSVALNEHSTDALKH 945

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trplNP_476895.1 trp 48..784 CDD:273311 349/762 (46%)
ANK 48..195 CDD:238125 76/151 (50%)
ANK repeat 78..114 CDD:293786 22/35 (63%)
ANK repeat 134..177 CDD:293786 18/47 (38%)
TRP_2 187..246 CDD:285535 38/58 (66%)
DUF2031 <706..>805 CDD:299055 30/119 (25%)
trpc4XP_002939629.3 trp 17..749 CDD:273311 352/768 (46%)
ANK repeat 69..133 CDD:293786 34/70 (49%)
ANK repeat 135..166 CDD:293786 15/30 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 263 1.000 Domainoid score I1896
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 784 1.000 Inparanoid score I514
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D355630at33208
OrthoFinder 1 1.000 - - FOG0000660
OrthoInspector 1 1.000 - - mtm9358
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X802
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.970

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