DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sqa and CPK2

DIOPT Version :9

Sequence 1:NP_001260832.1 Gene:sqa / 36002 FlyBaseID:FBgn0259678 Length:888 Species:Drosophila melanogaster
Sequence 2:NP_001326044.1 Gene:CPK2 / 820235 AraportID:AT3G10660 Length:646 Species:Arabidopsis thaliana


Alignment Length:507 Identity:150/507 - (29%)
Similarity:239/507 - (47%) Gaps:83/507 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 DSEPEGVLEPAFP--MRDVT---------INRNVDAHKHYDVLG-EVGRGKFGTVYKCRDKANGL 58
            :::||...||..|  ||.|:         :.|..:..|.:..|| ::|:|:|||.:.|.:|..|.
plant   146 ETKPETKAEPQKPKHMRRVSSAGLRTESVLQRKTENFKEFYSLGRKLGQGQFGTTFLCLEKGTGN 210

  Fly    59 QLAAKFVPIPKR-----EDKRNVEREVEIMNSLQHHL-----IIQLYAAYEYQKMMCVVLELIEG 113
            :.|.|  .|.||     ||..:|.||::||    |||     :|.:..|||....:.:|:||..|
plant   211 EYACK--SISKRKLLTDEDVEDVRREIQIM----HHLAGHPNVISIKGAYEDVVAVHLVMELCSG 269

  Fly   114 GELFDRVVDDEFVLTERVCRVFIRQVCEAMAFIHGNGIVHLDLKPENIL-VLTQKGNRIKIIDFG 177
            ||||||::.... .|||......|.:...:...|..|::|.||||||.| |..::.:.:|.||||
plant   270 GELFDRIIQRGH-YTERKAAELARTIVGVLEACHSLGVMHRDLKPENFLFVSREEDSLLKTIDFG 333

  Fly   178 LARKFDPDKRLRVLFGTPEFVAPEVVNFDCISYG--TDMWSVGVICYVLISGLSPFMGENDIETM 240
            |:..|.||:....:.|:|.:|||||:.   ..||  :|:||.|||.|:|:||:.||..|.:....
plant   334 LSMFFKPDEVFTDVVGSPYYVAPEVLR---KRYGPESDVWSAGVIVYILLSGVPPFWAETEQGIF 395

  Fly   241 SNVTIAKYDFEDECFNGISPECLDFIAKLLAKDLSTRMTAAECMKHKWLQ------QRPATAATA 299
            ..|.....||..:.:..||....|.:.|:|.:|...|:||.:.:.|.|:|      .:|..:|..
plant   396 EQVLHGDLDFSSDPWPSISESAKDLVRKMLVRDPKRRLTAHQVLCHPWVQIDGVAPDKPLDSAVL 460

  Fly   300 TPITKAASAASKSRLKSVSPVTAPSESSEDSTETIE-----DEDDEEEVAVQQAKQKDQQ----- 354
            :.: |..||.:|.: |....|.|.|.|.|:.....:     |.|:..::..::.|...::     
plant   461 SRM-KQFSAMNKFK-KMALRVIAESLSEEEIAGLKQMFKMIDADNSGQITFEELKAGLKRVGANL 523

  Fly   355 QDEELANLCGDAELENKELDATKDNLKNFIVRWETHPNSPYVFDVEGNVIAPLS-----ETSYPH 414
            ::.|:.:|...|:::|   ..|.| .|.||.. ..|.|.   .:.|.::.|..|     |:.:..
plant   524 KESEILDLMQAADVDN---SGTID-YKEFIAA-TLHLNK---IEREDHLFAAFSYFDKDESGFIT 580

  Fly   415 PRRTHGADSLSSSRVCSPSPCDSISTLTDDERGD--IEDLPEEDESRSAENE 464
            |      |.|..:       |:...  .:|.|.:  :.|:.::.:.|...||
plant   581 P------DELQQA-------CEEFG--VEDARIEEMMRDVDQDKDGRIDYNE 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqaNP_001260832.1 S_TKc 34..289 CDD:214567 98/268 (37%)
STKc_MLCK 40..289 CDD:271005 96/261 (37%)
CPK2NP_001326044.1 PspC_subgroup_2 <45..>159 CDD:411408 4/12 (33%)
STKc_CAMK 185..443 CDD:270687 98/267 (37%)
PTZ00184 480..622 CDD:185504 32/161 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0032
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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