DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqa and uhmk1

DIOPT Version :9

Sequence 1:NP_001260832.1 Gene:sqa / 36002 FlyBaseID:FBgn0259678 Length:888 Species:Drosophila melanogaster
Sequence 2:NP_001070127.1 Gene:uhmk1 / 767721 ZFINID:ZDB-GENE-060929-1014 Length:410 Species:Danio rerio


Alignment Length:385 Identity:87/385 - (22%)
Similarity:152/385 - (39%) Gaps:84/385 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KHYDVLGEVGRGKFGTVYKCRDKANGLQLAA--KFVPIPKREDKRNVEREVEIMNSLQ-HHLIIQ 93
            |.::|...:|:|...:||:.   ::|...:|  :|...|:..|...: :|..::..:| |..|:.
Zfish    22 KIWNVQARLGQGVSASVYRV---SSGRATSAVKEFQVDPQGGDYGYL-KESSVLEKIQGHKNIVT 82

  Fly    94 LYAAYEYQKMM-----CVVLELIE--GGELFDRVVDDEFVLTERVCRVFIRQVCEAMAFIHGNGI 151
            ||..:......     |::|||::  ..||..|..:....:.  :.:...|.|.||:.|:|..|.
Zfish    83 LYGMFTNHNPFGVATHCLLLELLDVSVSELLVRASNQGHSMW--LIQHCARDVLEALTFLHREGF 145

  Fly   152 VHLDLKPENILVLTQKGNRIKIIDFGLARKFDPDKRLRVLFGTPEFVAPEV----------VNFD 206
            ||.||||.|:| .:......|:|||||:.| :..:.::.: .|..:.|||.          |..|
Zfish   146 VHADLKPRNVL-WSADDECFKLIDFGLSFK-EGHQDVKYI-QTDGYRAPEAELQNSLAQAGVESD 207

  Fly   207 --CISYGTDMWSVGVICYVLISG--LSPFMGENDIETMSNVTIAKYDFEDECFNG---ISP---- 260
              |.: ..|:||:|::...:.||  |...:...:.:..|:..:      |..|:.   :.|    
Zfish   208 SGCTT-AVDLWSLGIVLLEMYSGMKLKETVKSQEWKDNSSAIV------DHIFSSNALVYPAIPV 265

  Fly   261 -ECLDFIAKLLAKDLSTRMTAAECMKHKWLQQRPA-----TAATATPITKAASAASKSRLKSVSP 319
             ...|.|..:|..|...|.||...:...:.....|     .....||:.:..:....|.|     
Zfish   266 FHLRDLIKSMLHNDPKLRSTAKAALMSPFFSIPFAPHIEDLVLLPTPVLRLLNVIDDSHL----- 325

  Fly   320 VTAPSESSEDSTETIEDEDDEE--------------------EVAVQQAKQKDQQQDEEL 359
                  .:||..|.|.::..||                    :|.|:.|...|.::.:.|
Zfish   326 ------YNEDEYEDIIEDMKEECQKYGTVVSLLIPKENPGKGQVFVEYANAGDSKEAQRL 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqaNP_001260832.1 S_TKc 34..289 CDD:214567 70/286 (24%)
STKc_MLCK 40..289 CDD:271005 69/280 (25%)
uhmk1NP_001070127.1 STKc_KIS 23..299 CDD:270922 70/291 (24%)
S_TKc 24..295 CDD:214567 70/286 (24%)
RRM_UHMK1 309..396 CDD:240911 15/82 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0032
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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