DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqa and mylka

DIOPT Version :9

Sequence 1:NP_001260832.1 Gene:sqa / 36002 FlyBaseID:FBgn0259678 Length:888 Species:Drosophila melanogaster
Sequence 2:XP_009302720.1 Gene:mylka / 569510 ZFINID:ZDB-GENE-030131-8207 Length:1857 Species:Danio rerio


Alignment Length:489 Identity:177/489 - (36%)
Similarity:265/489 - (54%) Gaps:67/489 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IDDSEPEGVLEPAFPMRDVTINRNVDAHKHYDVLGEVGRGKFGTVYKCRDKANGLQLAAKFVPIP 68
            ::.|:.|....|.:  |:|||..:|.....|||...:|.||||||:|..:|:.....|.||:...
Zfish  1398 VEPSDDESEKVPDY--RNVTIKTDVKVKDFYDVEDRLGTGKFGTVFKLIEKSTKKVWAGKFIKAY 1460

  Fly    69 KREDKRNVEREVEIMNSLQHHLIIQLYAAYEYQKMMCVVLELIEGGELFDRVVDDEFVLTERVCR 133
            ..::|.||.:|:.|||.|.|..::|...|:|.:..:.:|||:|.|||||||::|::|.||||...
Zfish  1461 SAKEKENVRQEIAIMNDLHHPKLVQCIDAFEGKTDIVMVLEMISGGELFDRIIDEDFELTEREVI 1525

  Fly   134 VFIRQVCEAMAFIHGNGIVHLDLKPENILVLTQKGNRIKIIDFGLARKFDPDKRLRVLFGTPEFV 198
            .::.|:.:.:.|||..||||||||||||:.:.:.|::||:|||||||:.:....|:|||||||||
Zfish  1526 KYMLQIVDGVNFIHKKGIVHLDLKPENIMCVNKTGSKIKLIDFGLARRLENAGSLKVLFGTPEFV 1590

  Fly   199 APEVVNFDCISYGTDMWSVGVICYVLISGLSPFMGENDIETMSNVTIAKYDFEDECFNGISPECL 263
            ||||:|::.|||.|||||:|||||:|:||||||||:||.||:||||.|.:|||||.|:.||.|..
Zfish  1591 APEVINYEAISYATDMWSIGVICYILVSGLSPFMGDNDNETLSNVTSATWDFEDEAFDEISEEAK 1655

  Fly   264 DFIAKLLAKDLSTRMTAAECMKHKWLQQRPATAATATPITKAASAASKSRLKSVSPVTAPSESSE 328
            |||:.||.||:..|:|..:|.:|.||:|        ......|...||.|:|... :....:.:.
Zfish  1656 DFISNLLKKDMKARLTCDQCFQHPWLKQ--------DTTNMEAKKLSKERMKKYI-LRRKWQKTG 1711

  Fly   329 DSTETIEDEDDEEEVAVQQAKQKDQQQDEELANLCGDAELEN----------KELDATKDNLKNF 383
            .:...|....:...:|...|| |....:.:......:.|.:.          |:::..:.:...|
Zfish  1712 HAVRAIGRLSNMALMAGVHAK-KSSPTEADAKQFAAELEAKTLMKPTFSSVIKDVEVVEGSAARF 1775

  Fly   384 IVRWETHPNSPYV-----------------FDVEGNVIAPLSETSYPHPRRTHGADSLSSSRVCS 431
            ..:.|.:|:...|                 :|.:||....:||        .:|.|....:    
Zfish  1776 DCKIEGYPDPEVVWYKDDQPIKETRHFQIDYDEDGNCSLVISE--------VNGDDDAKYT---- 1828

  Fly   432 PSPCDSISTLTDDERGD--------IEDLPEEDE 457
               |.::::|     |:        :|.:.||:|
Zfish  1829 ---CKAMNSL-----GETTCTAELIVEVMGEEEE 1854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqaNP_001260832.1 S_TKc 34..289 CDD:214567 136/254 (54%)
STKc_MLCK 40..289 CDD:271005 133/248 (54%)
mylkaXP_009302720.1 I-set 85..175 CDD:254352
Ig 91..165 CDD:299845
I-set 212..300 CDD:254352
Ig 231..301 CDD:299845
PHA03255 283..>461 CDD:165513
Ig 452..541 CDD:299845
I-set 453..542 CDD:254352
I-set 552..638 CDD:254352
IGc2 565..628 CDD:197706
I-set 661..750 CDD:254352
Ig 678..747 CDD:143165
I-set 759..848 CDD:254352
Ig 762..846 CDD:299845
I-set 1068..1157 CDD:254352
Ig 1087..1152 CDD:143165
Ig8_MLCK 1199..1296 CDD:143239
I-set 1199..1288 CDD:254352
FN3 1292..1381 CDD:238020
STKc_MLCK1 1423..1681 CDD:271093 136/257 (53%)
Pkinase 1426..1681 CDD:278497 136/254 (54%)
I-set 1756..1846 CDD:254352 15/109 (14%)
IGc2 1769..1836 CDD:197706 13/86 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 294 1.000 Domainoid score I1471
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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