DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqa and pnck

DIOPT Version :9

Sequence 1:NP_001260832.1 Gene:sqa / 36002 FlyBaseID:FBgn0259678 Length:888 Species:Drosophila melanogaster
Sequence 2:XP_021334045.1 Gene:pnck / 567480 ZFINID:ZDB-GENE-081105-127 Length:333 Species:Danio rerio


Alignment Length:336 Identity:99/336 - (29%)
Similarity:163/336 - (48%) Gaps:32/336 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 MRDVTINRNVDAHKHYDVLGEVGRGKFGTV----YKCRDKANGLQLAAKFVPIPKREDKRN-VER 78
            :||  :.:..|.:..|::..::|.|.|..|    ::|..|.    :|.|.:.....:.|.: :|.
Zfish     4 LRD--LRKKDDINAVYELKEKLGEGSFSEVRVAQHRCTQKL----VAVKCIRKRALKGKESMLEN 62

  Fly    79 EVEIMNSLQHHLIIQLYAAYEYQKMMCVVLELIEGGELFDRVVDDEFVLTERVCRVFIRQVCEAM 143
            ||.::..:.|..|:.|...:|....:.:|:.|:.||||.:|:: :....||:.....|.||.:|:
Zfish    63 EVAVLRRINHENIVSLEETFETPTKLYLVMTLLTGGELLNRIL-ERGSYTEKDASRVIYQVLQAV 126

  Fly   144 AFIHGNGIVHLDLKPENILVLTQ-KGNRIKIIDFGLARKFDPDKRLRVLFGTPEFVAPEVVNFDC 207
            .::|..|:||.||||||::..|. :.::|.|.||||: |.:....|....|||.:||||::....
Zfish   127 KYLHQLGVVHRDLKPENLIFETPLEDSKIVISDFGLS-KMEEQGALSTACGTPAYVAPELLQQKT 190

  Fly   208 ISYGTDMWSVGVICYVLISGLSPFMGENDIETMSNVTIAKYDFEDECFNGISPECLDFIAKLLAK 272
            .....|:|::|||.::|:.|..||..:||.:....:..|:|:|:...:|.||....|||..||.|
Zfish   191 YGKEVDLWAIGVITFILLCGYPPFYDDNDTQLYKLIIKAEYEFDSPYWNDISDSAKDFIVHLLQK 255

  Fly   273 DLSTRMTAAECMKHKWLQQRPATAATATPITKAASAA-----SKSRLKSVSPVTA---------- 322
            |.:.|....:..:|.|:.   ..||....|..:.||.     :||..|.....|.          
Zfish   256 DPAKRFNCEQASQHPWIS---GGAALDRNIHGSVSAQIQKNFAKSHWKRAFNATIIVHHLTKKAH 317

  Fly   323 PSESSEDSTET 333
            |.|..|.:..|
Zfish   318 PGEDDEGNQST 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqaNP_001260832.1 S_TKc 34..289 CDD:214567 82/260 (32%)
STKc_MLCK 40..289 CDD:271005 81/254 (32%)
pnckXP_021334045.1 PKc_like 13..289 CDD:328722 87/284 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0032
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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