DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqa and camk1gb

DIOPT Version :9

Sequence 1:NP_001260832.1 Gene:sqa / 36002 FlyBaseID:FBgn0259678 Length:888 Species:Drosophila melanogaster
Sequence 2:XP_021325441.1 Gene:camk1gb / 393802 ZFINID:ZDB-GENE-040426-1694 Length:486 Species:Danio rerio


Alignment Length:449 Identity:124/449 - (27%)
Similarity:211/449 - (46%) Gaps:64/449 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 YDVLGEVGRGKFGTVYKCRDKANGLQLAAKFVPIPKREDKR--NVEREVEIMNSLQHHLIIQLYA 96
            :|.:..:|.|.|..|:..:::..|...|.|.|   |:::||  |:|.|:.::..::|..::.|..
Zfish    74 FDFMDVLGSGAFSEVFMVKERKTGKLFAMKCV---KKKNKRDINLENEIAVLRKIKHENVVCLED 135

  Fly    97 AYEYQKMMCVVLELIEGGELFDRVVDDEFVLTERVCRVFIRQVCEAMAFIHGNGIVHLDLKPENI 161
            .||.:....:|::|:.|||||||:: |..:.:|......||||.||::::|.|||||.||||||:
Zfish   136 FYESRTHYYLVMQLVSGGELFDRIL-DRGMYSEMDASSVIRQVLEAVSYLHNNGIVHRDLKPENL 199

  Fly   162 LVLT-QKGNRIKIIDFGLARKFDPDKRLRVLFGTPEFVAPEVVNFDCISYGTDMWSVGVICYVLI 225
            |..: .:.::|.|.||||: |.:.:..:....|||.:|||||:.....|...|.||:|||.|:|:
Zfish   200 LYYSPDENSKIMISDFGLS-KMEDNGVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILL 263

  Fly   226 SGLSPFMGENDIETMSNVTIAKYDFEDECFNGISPECLDFIAKLLAKDLSTRMTAAECMKHKWLQ 290
            .|..||..|.:....|.:...:|:|:...::.||....|||..::.|:...|....:.::|.|: 
Zfish   264 CGYPPFYEETETRLFSKIMKGQYEFDSPFWDDISESAKDFIRNMMQKNPKMRFNTEQALRHPWI- 327

  Fly   291 QRPATAATATPITKAASAASKSRLKSVSPVTAPSESSEDSTETIEDEDDEEEVAVQQAKQKDQQQ 355
                       |.|  :|.|:....|||     .:..::..::...:.....||:...|:..|..
Zfish   328 -----------IGK--TARSQDIYHSVS-----EQMQKNFAKSKWKQAFNATVAINHMKKLQQAH 374

  Fly   356 DEELANLCGDAELENKEL----DATKDNLKNFIVRWETHPNSPYVFDVEGNVIAPLSET---SYP 413
            .|....| .|:..:..|:    .:|.::::..::.....||        |::..|...|   |..
Zfish   375 SEACVRL-KDSPRDVPEIKVIASSTPESVRKKLLSETPEPN--------GSMNVPCGSTEAKSQY 430

  Fly   414 HPRRTHGADSLSSSRVCSPSPCDSISTLTDDERG---------DIEDLPEEDESRSAEN 463
            ||.|.            |.|....:.|||..|:|         |:....:...:|..:|
Zfish   431 HPMRV------------SHSETTHVGTLTIAEKGKHVYHSEPADLNGYAKRSSNRPGQN 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqaNP_001260832.1 S_TKc 34..289 CDD:214567 88/257 (34%)
STKc_MLCK 40..289 CDD:271005 87/251 (35%)
camk1gbXP_021325441.1 PKc_like 70..353 CDD:328722 96/302 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0032
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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