DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sqa and Speg

DIOPT Version :9

Sequence 1:NP_001260832.1 Gene:sqa / 36002 FlyBaseID:FBgn0259678 Length:888 Species:Drosophila melanogaster
Sequence 2:XP_011236945.1 Gene:Speg / 11790 MGIID:109282 Length:3272 Species:Mus musculus


Alignment Length:1033 Identity:236/1033 - (22%)
Similarity:391/1033 - (37%) Gaps:284/1033 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 EPEGVLEPAFPMRDVTINRNVDAHK------HYDVLGEVGRGKFGTVYKCRDKANGLQLAAKFVP 66
            |.|||.|.             :.|:      :||:..|:|||.|..:.:..::::||:.||||:|
Mouse  1597 EVEGVGED-------------EEHRGRRLSDYYDIHQEIGRGAFSYLRRVVERSSGLEFAAKFIP 1648

  Fly    67 IPKREDKRNVEREVEIMNSLQHHLIIQLYAAYEYQKMMCVVLELIEGGELFDRVVDDEFVLTERV 131
             .:.:.|.:..||..::..|||..::..:.|:|.::.:.:|.||.. .||.:|:.....| .|..
Mouse  1649 -SQAKPKASARREARLLARLQHGCVLYFHEAFERRRGLVIVTELCT-EELLERMARKPTV-CESE 1710

  Fly   132 CRVFIRQVCEAMAFIHGNGIVHLDLKPENILVLTQKG--NRIKIIDFGLARKFDPDKRLRVLFGT 194
            .|.::|||.|.:.::|.:.::|||:||||:||....|  .:::|.|||.|::..|.:.....:||
Mouse  1711 TRTYMRQVLEGICYLHQSHVLHLDVKPENLLVWDGAGGEEQVRICDFGNAQELTPGEPQYCQYGT 1775

  Fly   195 PEFVAPEVVNFDCISYGTDMWSVGVICYVLISGLSPFMGENDIETMSNVTIAKYDFEDECFNGIS 259
            |||||||:||...:|..||:|.|||:.::.::|:|||:||||..|:.|:......||:..|..:|
Mouse  1776 PEFVAPEIVNQSPVSGVTDIWPVGVVAFLCLTGISPFVGENDRTTLMNIRNYNVAFEETTFLSLS 1840

  Fly   260 PECLDFIAKLLAKDLSTRMTAAECMKHKWLQQRPATAATATPITKAASAASKSRLKSVS------ 318
            .|...|:.|:|.:| ..|.||.|.::|.|.:.....|..:|...|...:..:.:...:|      
Mouse  1841 REARGFLIKVLVQD-RLRPTAEETLEHPWFKTEAKGAEVSTDHLKLFLSRRRWQRSQISYKCHLV 1904

  Fly   319 --PV----TAPSE-----------------SSEDSTETIEDEDDEEEVAVQQAKQKD-------- 352
              |:    .||.|                 ||.||    |:|:.||..:|.:..|.:        
Mouse  1905 LRPIPELLRAPPERVWVAMPRRQPPSGGLSSSSDS----EEEELEELPSVPRPLQPEFSGSRVSL 1965

  Fly   353 ---QQQDEEL----ANLCGDAELENKELDATKDNLKNFIVRWETHPNSPYVFDVEGNVIAPLSET 410
               ..:||.|    |......:.:.:|...:||.          ...||......|.     ...
Mouse  1966 TDIPTEDEALGTPEAGAATPMDWQEQERTPSKDQ----------EAPSPEALPSPGQ-----ESP 2015

  Fly   411 SYPHPRR------------------------THGADSLSSSRVCSPSPCDSISTLTDDERGD--- 448
            ..|.|||                        .|.|.|:...:..||||  ..:.||....|:   
Mouse  2016 DGPSPRRPELRRGSSAESALPRVGSREPGRSLHKAASVELPQRRSPSP--GATRLTRGGLGEGEY 2078

  Fly   449 ---IEDLPEEDESRSAENESPRSVATPINES-----REKLFPTVATSSPSTPTPQH--------- 496
               ::.|.:.......|:.....:..|:.||     |:   |.:|.::.|...|.|         
Mouse  2079 AQRLQALRQRLLRGGPEDGKVSGLRGPLLESLGGRARD---PRMARAASSEAAPHHQPPPESRGL 2140

  Fly   497 ----LFNENFDEFSGSQSTA----------------QQQRSMKSYLHTFD-------------RR 528
                .|::...|..|....|                |:..|:.:...|..             .:
Mouse  2141 QKSSSFSQGEAEPRGRHRRAGAPLEIPVARLGARRLQESPSLSALSETQPPSPARPSVPKLSITK 2205

  Fly   529 NSDTTYLLGRRS----------------SGERVNLAD------EIRKLSDHLLMLAEINTKLGDA 571
            :.:.:.:..|.|                ..|.|..|.      .::..:..|...|:|...| ..
Mouse  2206 SPEPSAVTSRDSPQPPEPQPVPEKVPEPKPEPVRAAKPAQPPLALQMPTQPLTPYAQIMQSL-QL 2269

  Fly   572 NNNGSSSGAPADPP-------AAAAAAAAP--------VPTSTAPASVA-----------PSGST 610
            ::...|...||.||       |..|..|:|        ||::..|..:|           |..|.
Mouse  2270 SSPTLSPQDPAVPPSEPKPHAAVFARVASPPPGVSEKRVPSARTPPVLAEKARVPTVPPRPGSSL 2334

  Fly   611 SSKTSEISQE-----------------GNRWTSKTTS----------SSSWNRPTLKGGLFSQAS 648
            |.....:..|                 |.|..|::.|          .....||:..|.......
Mouse  2335 SGSIENLESEAVFEAKFKRSRESPLSRGLRLLSRSRSEERGPFRGAEDDGIYRPSPAGTPLELVR 2399

  Fly   649 SSSQSQSTYD---DGKGKTKISSLSVRLQQSIEETP---------------KLSNGNSSSSKSLV 695
            ...:|:|..|   .|: ...:..||:.|.|.:..||               :.|.|.||:..|.|
Mouse  2400 RPERSRSVQDLRVAGE-PGLVRRLSLSLSQKLRRTPPGQRHPAWESRSGDGESSEGGSSARASPV 2463

  Fly   696 QSQRK---STVQTMSSSNARSFTNQQVQRTSTTSSKVISSSTRSSNTSSS--------NYIASNA 749
            .:.|:   ||::.:||...||.:::.....|..|:.:.....|:::...|        |.:.|  
Mouse  2464 LAVRRRLSSTLERLSSRLQRSGSSEDSGGASGRSTPLFGRLRRATSEGESLRRLGVPHNQLGS-- 2526

  Fly   750 SNSISTSASNPS--STGASNPITTSASNESASSRRAKFRINQMSRDVPVGLPDTHQTV 805
                .|.|:.||  |.|:....|:.:|....|..|.::.::::.:|..:..|:...:|
Mouse  2527 ----QTGATTPSAESLGSEASGTSGSSAPGESRSRHRWGLSRLRKDKGLSQPNLSSSV 2580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqaNP_001260832.1 S_TKc 34..289 CDD:214567 94/256 (37%)
STKc_MLCK 40..289 CDD:271005 91/250 (36%)
SpegXP_011236945.1 I-set 45..127 CDD:369462
PHA03247 <320..697 CDD:223021
I-set 737..826 CDD:369462
SPEG_u2 827..883 CDD:293256
I-set 884..974 CDD:369462
Ig 988..1073 CDD:386229
I-set 1079..1168 CDD:369462
I-set 1203..1292 CDD:369462
FN3 1297..>1374 CDD:238020
I-set 1500..1589 CDD:369462
STKc_SPEG_rpt1 1613..1869 CDD:271010 94/259 (36%)
PHA03247 <1951..2355 CDD:223021 69/424 (16%)
PHA03307 2235..>2557 CDD:223039 69/329 (21%)
I-set 2597..2687 CDD:369462
FN3 2691..2777 CDD:238020
PHA03247 <2760..2981 CDD:223021
STKc_SPEG_rpt2 2967..3223 CDD:271013
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0032
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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