DRSC/TRiP Functional Genomics Resources

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Protein Alignment sqa and camk1da

DIOPT Version :9

Sequence 1:NP_001260832.1 Gene:sqa / 36002 FlyBaseID:FBgn0259678 Length:888 Species:Drosophila melanogaster
Sequence 2:NP_001116532.1 Gene:camk1da / 100144566 ZFINID:ZDB-GENE-080402-7 Length:433 Species:Danio rerio


Alignment Length:469 Identity:130/469 - (27%)
Similarity:204/469 - (43%) Gaps:99/469 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 DVTINRNVDAHKHYDVLGEV-GRGKFGTVYKCRDKANGLQLAAKFVPIPKREDKR-NVEREVEIM 83
            |.:..:.||..|......|| |.|.|..|....:::.|...|.|.:|....:.|. ::|.|:.::
Zfish    11 DCSWKKQVDNIKEIFEFKEVLGTGAFSEVVLAEERSTGKMYAVKCIPKKALKGKESSIENEIAVL 75

  Fly    84 NSLQHHLIIQLYAAYEYQKMMCVVLELIEGGELFDRVVDDEFVLTERVCRVFIRQVCEAMAFIHG 148
            ..::|..|:.|...||....:.::::|:.|||||||:|:..| .||:.....||||.:|:.::|.
Zfish    76 RKIKHENIVALEDIYESSDHLYLIMQLVSGGELFDRIVEKGF-YTEKDASTLIRQVLDAVNYLHT 139

  Fly   149 NGIVHLDLKPENILVLT-QKGNRIKIIDFGLARKFDPDKRLRVLFGTPEFVAPEVVNFDCISYGT 212
            .||||.||||||:|... |.|::|.|.||||::.......:....|||.:|||||:.....|...
Zfish   140 MGIVHRDLKPENLLYFNPQDGSKIMISDFGLSKMEGTGDVMSTACGTPGYVAPEVLAQKPYSKAV 204

  Fly   213 DMWSVGVICYVLISGLSPFMGENDIETMSNVTIAKYDFEDECFNGISPECLDFIAKLLAKDLSTR 277
            |.||:|||.|:|:.|..||..|||.:....:..|.|:|:...::.||....|||:.|:.||.|.|
Zfish   205 DCWSIGVIAYILLCGYPPFYDENDSKLFEQILKADYEFDAPYWDDISDSAKDFISCLMEKDPSKR 269

  Fly   278 MTAAECMKHKWL----------------QQRP-------ATAATATPITK--------------- 304
            .|..:.::|.|:                |.|.       ..|..||.:.:               
Zfish   270 NTCEQALRHPWIAGDTALCKNIHESVSRQMRKNFAKSKWRQAFNATAVVRHMRRLQLGSSMGSSM 334

  Fly   305 -AASAASKSRLKSVSPVTAPSESSEDSTETIEDEDDEEEVAVQQAKQKDQQQDEELANLCGDAEL 368
             .::.|:::|:.:.:|   |..::.:||                                  |.|
Zfish   335 DQSNTANQNRILNANP---PLNTTTNST----------------------------------APL 362

  Fly   369 ENKELDATKDNLKNFIVRWETHPNSPYVFDV-EGNVIAPLSE-TSYPHP--RRTHGADSLSSSRV 429
            ...:..|             .:||:..:.|: .||...|..: |:.||.  .....|.|.|.:..
Zfish   363 TQNQKPA-------------PNPNAILINDMATGNTPTPRKDCTAPPHTSCSLASAASSSSGAEP 414

  Fly   430 CSPSP--CDSISTL 441
            |.|.|  ..|:||:
Zfish   415 CRPLPPSVASVSTV 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sqaNP_001260832.1 S_TKc 34..289 CDD:214567 93/257 (36%)
STKc_MLCK 40..289 CDD:271005 92/251 (37%)
camk1daNP_001116532.1 STKc_CaMKI_delta 14..314 CDD:271070 100/300 (33%)
S_TKc 25..281 CDD:214567 93/256 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0032
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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