DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Uba1 and APP-BP1

DIOPT Version :9

Sequence 1:NP_477310.2 Gene:Uba1 / 35998 FlyBaseID:FBgn0023143 Length:1191 Species:Drosophila melanogaster
Sequence 2:NP_001261699.1 Gene:APP-BP1 / 39244 FlyBaseID:FBgn0261112 Length:524 Species:Drosophila melanogaster


Alignment Length:545 Identity:99/545 - (18%)
Similarity:197/545 - (36%) Gaps:140/545 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   586 RYDSQIAIFGKKFQEKLADSKWFIVGAGAIGCELLKNFGMLGLGTGNGQIFVTDMDLIEKSNLNR 650
            :||.||.::|:..|..|..:...:|...|:|||..|...:.|:    |...|.|...:::.:|..
  Fly    17 KYDRQIRLWGEHGQTLLEAATVCLVNVTAVGCETAKGLVLPGI----GGFTVADGSTVKEEDLGN 77

  Fly   651 QFLFRPHDVQKPKSMTAADAIKRMNPEVNVTAYELRVGAETEKVFSEDFFGKLD-GVANALDNVD 714
            .|......:.|.|::.....::.:||:||....:  ..|:.......:||...| .:|:.|:...
  Fly    78 NFFLDSSYLGKSKALACMQLLQELNPDVNGDYVD--ESADFLLANRPNFFDSFDLVIASNLNEQT 140

  Fly   715 ARIYMDRKCIFNRIPLVETGTLGTLGNVQVIVPFATESYSSSQDPPEKSIPICTLKNFPNAIEHT 779
            ..:..:|....| :||:...:||.||.:::.:    ..:...:..|:.       :.|...:||.
  Fly   141 LLLLAERLWELN-VPLIYCRSLGMLGTIRLQI----REHCIVEAHPDN-------RQFDLRLEHP 193

  Fly   780 LQWARDAFEGVFKQSAENAAQYIADPQFTERIAKLPGIQPL------------------------ 820
            ....|:..:|                  ||..:|:|.:..|                        
  Fly   194 FDALREHLDG------------------TEVTSKVPWLLVLHKYLNVWQKQQADGTQTPRNYKEK 240

  Fly   821 -EILDSIKKALIDDKPKSFAHCVEWAR-LYWEDQYVNQIKQLLFNFPPDQITSSGQPFW------ 877
             ::.::|::.:..|: :::...::... .:...|....:|.:..:...:|:......||      
  Fly   241 NQLKETIREEMKADE-ENYEEAIKAVNTAFGAGQVPKSLKAIFEDDACEQLNKKSNVFWIMAKAL 304

  Fly   878 --------SG----PKRCPDPLVFDVNDPMHLDFIYAAANLRAEVYGIEQVRNRETIAELVQKVK 930
                    .|    |...|| :..:.:..:.|..||....|:    ..:||.::  ..|.::::.
  Fly   305 KHFVIHENEGHLPLPGVLPD-MTANTDSYIALQHIYRQQALQ----DADQVYHK--CQEYLKQLA 362

  Fly   931 VP--EFKPRSGVKIETNEAAAAASANNFDDGELDQDRVDKIISELLKNADKSSKITPLEFEKDDD 993
            :|  ....|| |::...|||..|....               :.:.:..:|||::.||..:.:..
  Fly   363 LPADSIDERS-VRLICKEAAGLAVIRG---------------TRIAEEYEKSSRLLPLVEDNELQ 411

  Fly   994 SNL---------HMDFIVACSNLRAANYKIPPADRHKSKLIAGKIIPAIA--------------- 1034
            .||         :..|:..|.|:  ....|...|..:.|.||.|::..:.               
  Fly   412 GNLTAYNFALRAYERFLSECGNI--PGECIVEQDIGRLKSIAAKMLSDLGMHATISDDVLHEICR 474

  Fly  1035 -------TTTSVLSGLAVLEVIKLI 1052
                   ..::.:.|.|..||||:|
  Fly   475 YGGAELHAVSAFIGGCAAQEVIKII 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Uba1NP_477310.2 Ube1 194..1188 CDD:273603 99/545 (18%)
Ube1_repeat1 199..574 CDD:238768
E1_4HB 447..510 CDD:292809
Ube1_repeat2 606..1144 CDD:238767 92/525 (18%)
APP-BP1NP_001261699.1 APPBP1_RUB 16..522 CDD:238770 99/545 (18%)
ThiF 17..>171 CDD:223552 39/160 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446861
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0476
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10953
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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