DRSC/TRiP Functional Genomics Resources

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Protein Alignment Uba1 and Uba2

DIOPT Version :9

Sequence 1:NP_477310.2 Gene:Uba1 / 35998 FlyBaseID:FBgn0023143 Length:1191 Species:Drosophila melanogaster
Sequence 2:NP_001094049.1 Gene:Uba2 / 308508 RGDID:1312023 Length:639 Species:Rattus norvegicus


Alignment Length:639 Identity:170/639 - (26%)
Similarity:279/639 - (43%) Gaps:149/639 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   596 KKFQEKLADSKWFIVGAGAIGCELLKNFGMLGLGTGNGQIFVTDMDLIEKSNLNRQFLFRPHDVQ 660
            ::..|.::..:..:||||.||||||||..:    ||...|.:.|:|.|:.|||||||||:...|.
  Rat     9 RELAEAVSGGRVLVVGAGGIGCELLKNLVL----TGFSHIDLIDLDTIDVSNLNRQFLFQKKHVG 69

  Fly   661 KPKSMTAADAIKRMNPEVNVTAYELRVGAETEKVFSED----FFGKLDGVANALDNVDARIYMDR 721
            :.|:..|.:::.:.:|:.|:.|:.       :.:.:.|    ||.:...|.|||||..||.:::|
  Rat    70 RSKAQVAKESVLQFHPQANIEAHH-------DSIMNPDYNVEFFRQFILVMNALDNRAARNHVNR 127

  Fly   722 KCIFNRIPLVETGTLGTLGNVQVIVPFATESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDA 786
            .|:...:||:|:||.|.||.|..|....||.|.....|.:::.|.||::|.|:...|.:.||:..
  Rat   128 MCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVWAKYL 192

  Fly   787 FEGVFKQSAENAAQYI----ADPQFTERIAKLPGIQPLEILDSIKKALIDDKPKSFAHCVEWARL 847
            |..:|.:  |:|.|.:    |||:        ...:|.| .::..:|..:|.........|||:.
  Rat   193 FNQLFGE--EDADQEVSPDRADPE--------AAWEPTE-AEARARASNEDGDIKRISTKEWAKS 246

  Fly   848 YWEDQ-------YVNQIKQLLFNFPPDQITSSGQPFWSGPKRCPDPLVFDVNDPMHLDFIYAAAN 905
            ...|.       :.:.|:.||          :....|.  ||.|         |:.||:      
  Rat   247 TGYDPVKLFTKLFKDDIRYLL----------TMDKLWR--KRKP---------PVPLDW------ 284

  Fly   906 LRAEVYGIEQVRNRETIAELVQKVKVPEFKPRSGVKIETNEAAAAASANNFDDGELDQDRVDKII 970
              |||    |.:..|..|:       .:.:|:.|:|               |...||......:.
  Rat   285 --AEV----QSQGEEANAD-------QQSEPQLGLK---------------DQQVLDVKSYASLF 321

  Fly   971 SELLKN-----ADKSSKITPLEFEKDDDSNLHMDFIVACSNLRAANYKIPPADRHKSKLIAGKII 1030
            |:.::.     |:|... ..|.::|||..  .|||:.:.:|||...:.:....|...|.:||.||
  Rat   322 SKSIETLRVRLAEKGDG-AELIWDKDDPP--AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNII 383

  Fly  1031 PAIATTTSVLSGLAVLEVIKLIVGHRD------LVKFKNGFANLALP----------FMAFSEPL 1079
            ||||||.:|::||.|||.:|::.|..|      |.|..|....|.:|          ::..|:| 
  Rat   384 PAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPNTNCYVCASKP- 447

  Fly  1080 PAAKNTYYGKEWTLWDRFEVTGELSLQE--FLNYFEENEKLKITMLSQGV-------SMLYSFFM 1135
                              |||..|::.:  .|...::..|.|..|::..|       ::|.|  .
  Rat   448 ------------------EVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILIS--S 492

  Fly  1136 PKAKCSERLPLPMSEV-VRRVSKRRLEP--HERSLVFEICCNDVDGEDVEVPYV 1186
            .:.:.....|..:|:. :|..|:.:.:.  .:.:|:..|..::..|:|||...|
  Rat   493 EEGETEANNPKKLSDFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVV 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Uba1NP_477310.2 Ube1 194..1188 CDD:273603 170/639 (27%)
Ube1_repeat1 199..574 CDD:238768
E1_4HB 447..510 CDD:292809
Ube1_repeat2 606..1144 CDD:238767 158/582 (27%)
Uba2NP_001094049.1 ThiF 9..>175 CDD:279270 63/176 (36%)
Uba2_SUMO 19..443 CDD:238766 145/503 (29%)
UAE_UbL 451..537 CDD:291402 14/87 (16%)
UBA2_C 548..634 CDD:292812
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0476
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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