DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp2 and Mmp9

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_112317.2 Gene:Mmp9 / 81687 RGDID:621320 Length:708 Species:Rattus norvegicus


Alignment Length:846 Identity:177/846 - (20%)
Similarity:255/846 - (30%) Gaps:376/846 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 SKKAKTAISEDIMYNYLMQFDYLPKSDLETGALRTEDQLKEAIRSLQSFGNITVTGEIDSATARL 102
            |....|.::||.:|.|    .|...:.:    :..:..|:.|:..||...::..|||:||.|.:.
  Rat    38 SNLTDTQLAEDYLYRY----GYTRAAQM----MGEKQSLRPALLMLQKQLSLPQTGELDSETLKA 94

  Fly   103 IQKPRCGVGDRRSADSFSPDNLYHEIGSNVRVRRFALQGPKWSRTDLTWSMVNRSMPDASKVERM 167
            |:.|||||.|.....:|..|..:|.......::.:.        .||...:::.|.         
  Rat    95 IRSPRCGVPDVGKFQTFEGDLKWHHHNITYWIQSYT--------EDLPRDVIDDSF--------- 142

  Fly   168 VQTALDVWANHSKLTFREVYSDQADIQILFARRAHGDGYKFDGPGQVLAHAFYPGEGRGGDAHFD 232
             ..|..||:..:.|||..||..:|||.|.|....|||||.|||...:|||||.||.|..||||||
  Rat   143 -ARAFAVWSAVTPLTFTRVYGLEADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFD 206

  Fly   233 ADETWNF----------------------------------DGESD------------------- 244
            .||.|:.                                  ||.:|                   
  Rat   207 DDELWSLGKGAVVPTYFGNANGAPCHFPFTFEGRSYLSCTTDGRNDGKPWCGTTADYDTDRKYGF 271

  Fly   245 -------DSHG------------------------------------------------------ 248
                   ..||                                                      
  Rat   272 CPSENLYTEHGNGDGKPCVFPFIFEGHSYSACTTKGRSDGYRWCATTANYDQDKLYGFCPTRADV 336

  Fly   249 -----------------------------------------TNF----------------LNVAL 256
                                                     :||                ..||.
  Rat   337 TVTGGNSAGEMCVFPFVFLGKQYSTCTGEGRSDGRLWCATTSNFDADKKWGFCPDQGYSLFLVAA 401

  Fly   257 HELGHSLGLAHSAIPDAVMFPWYQNNEVAGNLPDDDRYGIQQLYGTKEKTWGPYKPQTTTTTTTT 321
            ||.||:|||.||::|:|:|:|.|..:| ...|.:||..|||.|||...|. .|..|.||......
  Rat   402 HEFGHALGLDHSSVPEALMYPMYHYHE-DSPLHEDDIKGIQHLYGRGSKP-DPRPPATTAAEPQP 464

  Fly   322 TTMRAMIYRADKPAYWPWNNPSNNPNNDRNRARERQEEERRRQEKERRRQEEERRHQEEERRRQV 386
            |....|...|...||     |:..|.                                       
  Rat   465 TAPPTMCPTAPPMAY-----PTGGPT--------------------------------------- 485

  Fly   387 EERQRQEEERWRQEQERQEEENRRRKIEHKSQWERNPSKERNRPRERQEMERRRQEQERQEQERQ 451
                                                                             
  Rat   486 ----------------------------------------------------------------- 485

  Fly   452 EQEDRRRERERDRQLEWERRNRNGAREPVTPTANTTPRPTNKP------YPTVHRQHHHHNKPRK 510
                                        |.||...:|.||..|      .||         :...
  Rat   486 ----------------------------VAPTGAPSPGPTGPPTAGPSEAPT---------ESST 513

  Fly   511 PKPDSC-MTYYDAISIIRGELFIFRGPYLWRIGTSG--LYNGYPTEIRRHWSALPENLTKVDAVY 572
            |..:.| :..:|||:.|:|.|..|:....|:....|  ...| |..|.|.|.|||   .|:::.:
  Rat   514 PVDNPCNVDVFDAIADIQGALHFFKDGRYWKFSNHGGSQLQG-PFLIARTWPALP---AKLNSAF 574

  Fly   573 ENKQ-RQIVFFIGREYYVF--NSVMLAPGFPKPLASLGLPPTLTHIDASFVWGHNNRTYMTSGTL 634
            |:.| ::|.||.||:.:|:  .||:    .|:.|..|||...:|.: ...:.....:..:.|...
  Rat   575 EDPQSKKIFFFSGRKMWVYTGQSVL----GPRSLDKLGLGSEVTLV-TGLLPRRGGKALLISRER 634

  Fly   635 YWRIDDYTGQVELDYPRDM----SIWSGVGYNIDAAFQYLDGKTYFFKNLGYW--EFNDDRMKVA 693
            .|:.|..:.:|:   |:.:    :.:|||.:|....|.|.| |.||..:..:|  .|::...:|.
  Rat   635 IWKFDLKSQKVD---PQSVTRLDNEFSGVPWNSHNVFHYQD-KAYFCHDKYFWRVSFHNRVNQVD 695

  Fly   694 H 694
            |
  Rat   696 H 696

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 72/328 (22%)
ZnMc_MMP 143..301 CDD:239805 72/328 (22%)
HX 513..707 CDD:238046 54/194 (28%)
Mmp9NP_112317.2 PG_binding_1 41..95 CDD:396175 16/61 (26%)
Peptidase_M10 116..445 CDD:395334 73/347 (21%)
FN2 224..272 CDD:128373 3/47 (6%)
FN2 282..330 CDD:128373 1/47 (2%)
FN2 341..389 CDD:128373 2/47 (4%)
PT 458..489 CDD:282710 9/167 (5%)
PT 475..510 CDD:282710 13/180 (7%)
HX 517..707 CDD:238046 54/193 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.010

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