DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp2 and mmp15

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_001015921.1 Gene:mmp15 / 548675 XenbaseID:XB-GENE-1014388 Length:648 Species:Xenopus tropicalis


Alignment Length:749 Identity:212/749 - (28%)
Similarity:295/749 - (39%) Gaps:231/749 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 YLMQFDYLPKSDLETGALRTEDQLKEAIRSLQSFGNITVTGEIDSATARLIQKPRCGVGDRRSAD 117
            :|..:.|||::..:...:|:...|..||..:|.|..|..|||:|..|...:|||||||       
 Frog    48 WLKLYGYLPQTSRQMSTMRSLQILSSAISEMQRFYGIPETGELDHTTTEWMQKPRCGV------- 105

  Fly   118 SFSPDNLYHEIGSNVRVRRFALQGPKWSRTDLTWSMVNRS-------MPDASKVERMVQTALDVW 175
               ||.....:.||:|.:|:|..|.||::..||:|:.|.|       ..||      ::.|.|||
 Frog   106 ---PDQFGTRVKSNMRRKRYAHTGRKWNQQHLTYSIQNYSDKLGMHNSIDA------IRKAFDVW 161

  Fly   176 ANHSKLTFREV-YS------DQADIQILFARRAHGDGYKFDGPGQVLAHAFYPGEGRGGDAHFDA 233
            :..:.|||||| |.      ..|||.||||...|||...|||||..||||::||.|.|||||||:
 Frog   162 SKATSLTFREVPYEAVRQRHSSADILILFASGFHGDSSPFDGPGGFLAHAYFPGPGMGGDAHFDS 226

  Fly   234 DETWNFDGESDDSHGTNFLNVALHELGHSLGLAHSAIPDAVMFPWYQNNEVAG-NLPDDDRYGIQ 297
            :|.|..  |:.|..|.:...||:|||||||||.||..|.|:|.|:||..:... .||:|||.|||
 Frog   227 EEPWTV--ENMDLAGNHLFLVAVHELGHSLGLEHSNNPSAIMAPFYQWMDTEDFQLPEDDRRGIQ 289

  Fly   298 QLYGTKEKTWGPYKPQTTTTTTTTTTMRAMIYRADKPAYWPWNNPSNNPNNDRNRARERQEEERR 362
            |||       ||...|..:|.:...|                                       
 Frog   290 QLY-------GPPVDQIPSTQSPLPT--------------------------------------- 308

  Fly   363 RQEKERRRQEEERRHQEEERRRQVEERQRQEEERWRQEQERQEEENRRRKIEHKSQWERNPSKER 427
                                                                        |.|  
 Frog   309 ------------------------------------------------------------PGK-- 311

  Fly   428 NRPRERQEMERRRQEQERQEQERQEQEDRRRERERDRQLEWERRNRNGAREPVTPTANTTPRPTN 492
                                   .|..|:                    |.|..|......||.|
 Frog   312 -----------------------PEVPDK--------------------RPPKPPPRGKPERPGN 333

  Fly   493 KPYPTVHRQHHHHNKPRKPK---PDSCMTYYDAISIIRGELFIFRGPYLWRIGTSGLYNGYPTEI 554
            .|.|         ..|..|.   |:.|...:||:|::|||:|:|:|.:.||:..:.:.:.||..|
 Frog   334 APPP---------RSPSNPDQYGPNICEGNFDAVSVLRGEMFVFKGAWFWRVRHNRVLDNYPMPI 389

  Fly   555 RRHWSALPENLTKVDAVYENKQRQIVFFIGREYYVFNSVMLAPGFPKPLASLGLPPTLTHIDASF 619
            ...|..||.|:|   |.||....:.|||.|.:|::|....|..|:|:||.|.|.......||.:.
 Frog   390 GHFWRGLPPNIT---AAYERHDGKFVFFKGEKYWLFREANLEAGYPQPLTSFGYGIPYDRIDTAI 451

  Fly   620 VWGHNNRTYMTSGTLYWRIDDYTGQVELDYPRDMSIWSGVGYNIDAAFQYLDGK-TYFFKNLGYW 683
            .|.....||:..|..|||.::.:...::.||:.:::|:|:......||...|.. |||:|...||
 Frog   452 FWEPTGHTYLFRGDKYWRFNEESRSADVGYPKPITVWAGIPDTPKGAFLSSDSTYTYFYKGAKYW 516

  Fly   684 EFNDDRMKVAHARAKLSARRWMQCARSA-NEVDDEQRW---------------------TASLVS 726
            :|::.::|......|...|.:|.|.... .:.|...||                     :.|...
 Frog   517 KFDNQQLKTEPGYPKSILRDFMGCQEEVFQDPDVVPRWPDVEHPPFNPDVESEDKDDKDSDSAGR 581

  Fly   727 EGEETGRSGSRELRINHF---------ILSILLL 751
            |...|||.....:.|:.:         |:.:|||
 Frog   582 EDPNTGRDVDVVVHIDEYTRAVSVAMVIVPLLLL 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 83/172 (48%)
ZnMc_MMP 143..301 CDD:239805 83/172 (48%)
HX 513..707 CDD:238046 64/194 (33%)
mmp15NP_001015921.1 PG_binding_1 45..98 CDD:366659 16/49 (33%)
Peptidase_M10 128..293 CDD:334067 84/179 (47%)
HX 348..540 CDD:238046 64/194 (33%)
DUF3377 579..648 CDD:371766 9/37 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 145 1.000 Domainoid score I4538
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 1 1.000 - - FOG0000840
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3504
SonicParanoid 1 1.000 - - X44
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.050

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