DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mmp2 and MMP2

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_004521.1 Gene:MMP2 / 4313 HGNCID:7166 Length:660 Species:Homo sapiens


Alignment Length:779 Identity:186/779 - (23%)
Similarity:291/779 - (37%) Gaps:220/779 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 QSMCIQELSLPPEGSHSTAATR-------SKKAKTAISEDIMYNYLMQFDYLPKSDLETGALRTE 73
            :::|:....|    ||:.||..       ....||  .:::...||..|...||.......    
Human    15 RALCLLGCLL----SHAAAAPSPIIKFPGDVAPKT--DKELAVQYLNTFYGCPKESCNLFV---- 69

  Fly    74 DQLKEAIRSLQSFGNITVTGEIDSATARLIQKPRCGVGDRRSADSFSPDNLYHEIGSNVRVRRFA 138
              ||:.::.:|.|..:..||::|..|...::|||||          :||         |....|.
Human    70 --LKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCG----------NPD---------VANYNFF 113

  Fly   139 LQGPKWSRTDLTWSMVNRSMP-DASKVERMVQTALDVWANHSKLTFREVYSDQADIQILFARRAH 202
            .:.|||.:..:|:.::..:.. |...|:.....|..||::.:.|.|..::..:|||.|.|.|..|
Human   114 PRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEH 178

  Fly   203 GDGYKFDGPGQVLAHAFYPGEGRGGDAHFDADETW-------------NFDGESDD----SHGTN 250
            ||||.|||...:|||||.||.|.|||:|||.||.|             |.|||...    .:|..
Human   179 GDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKE 243

  Fly   251 FLNVALHELGHSLGLAHSAIPDAVMFPWYQNNEVAGNLPDDDRYGI---QQLYGTKEKTWG---- 308
            :.:..  :.|.|.|           |.|.....   |...|.:||.   :.|:.......|    
Human   244 YNSCT--DTGRSDG-----------FLWCSTTY---NFEKDGKYGFCPHEALFTMGGNAEGQPCK 292

  Fly   309 -PYKPQTTTTTTTTTTMRAMIYR---------ADK--------------------PAYWPWNNPS 343
             |::.|.|:..:.||..|...||         .||                    |..:|:....
Human   293 FPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLG 357

  Fly   344 NNPNNDRNRARERQEEERRRQEKERRRQEEERRHQEEERRRQVEERQRQEEERWRQEQER----- 403
            |...:..:..|                        .:.:..........::.:|....::     
Human   358 NKYESCTSAGR------------------------SDGKMWCATTANYDDDRKWGFCPDQGYSLF 398

  Fly   404 ---QEEENRRRKIEHKSQ----------WERNPSKERNRPRERQEMERRRQEQERQEQERQEQED 455
               ..|......:||...          :.:|                          .|..|:|
Human   399 LVAAHEFGHAMGLEHSQDPGALMAPIYTYTKN--------------------------FRLSQDD 437

  Fly   456 RRRERERDRQLEWERRNRNGAREPVTPTANTTPRPTNKPYPTVHRQHHHHNKPRKPKPDSCM--T 518
            .:..:|           ..||...:  ...|.|.||..|.                .|:.|.  .
Human   438 IKGIQE-----------LYGASPDI--DLGTGPTPTLGPV----------------TPEICKQDI 473

  Fly   519 YYDAISIIRGELFIFRGPYLWRIGTSGLYNGYPTEIRRHWSALPENLTKVDAVYENKQRQ-IVFF 582
            .:|.|:.||||:|.|:..::||..|.......|..:...|..|||   |:|||||..|.: .|||
Human   474 VFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPE---KIDAVYEAPQEEKAVFF 535

  Fly   583 IGREYYVFNSVMLAPGFPKPLASLGLPPTLTHIDASFVWGHNNRTYMTSGTLYWRIDDYTGQVEL 647
            .|.||:::::..|..|:||||.||||||.:..:||:|.|..|.:||:.:|..:||.::...:::.
Human   536 AGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 600

  Fly   648 DYPRDMS-IWSGVGYNIDAAFQYL-DGKTYFFKNLGYWEFNDDRMKVAHARAKLSARR--WMQC 707
            .:|:.:: .|:.:..|:||..... .|.:||||...|.:..:..:|    ..|..:.:  |:.|
Human   601 GFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLK----SVKFGSIKSDWLGC 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 56/178 (31%)
ZnMc_MMP 143..301 CDD:239805 56/178 (31%)
HX 513..707 CDD:238046 67/200 (34%)
MMP2NP_004521.1 PG_binding_1 <70..97 CDD:307564 8/26 (31%)
Cysteine switch. /evidence=ECO:0000250 100..107 6/25 (24%)
Collagenase-like 1 110..221 43/110 (39%)
Peptidase_M10 118..446 CDD:306839 80/404 (20%)
Collagen-binding 222..396 31/213 (15%)
FN2 226..274 CDD:128373 14/63 (22%)
FN2 284..332 CDD:128373 11/47 (23%)
FN2 342..390 CDD:128373 5/71 (7%)
Collagenase-like 2 397..465 15/122 (12%)
Required for inhibitor TIMP2 binding. /evidence=ECO:0000269|PubMed:1655733 414..660 79/307 (26%)
HX 466..660 CDD:238046 67/200 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.920

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