DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp2 and Mmp27

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_001100269.1 Gene:Mmp27 / 300340 RGDID:1306642 Length:511 Species:Rattus norvegicus


Alignment Length:692 Identity:164/692 - (23%)
Similarity:243/692 - (35%) Gaps:246/692 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 STAATRSKKAKTAISEDIMYNYLMQFDYLPKSDLETGAL---RTEDQLKEAIRSLQSFGNITVTG 93
            |:|....:|.|...:..:...||.||..|   ::|...|   :....|...::.:|:|..:||||
  Rat    15 SSAFLPDRKDKNEENNQLAQAYLNQFYSL---EIEGSHLVQSKNRSLLDGKLQEMQAFFGLTVTG 76

  Fly    94 EIDSATARLIQKPRCGVGDRRSADSFSPDNLYHEIGSNVRVRRFALQGPKWSRTDLTWSMVNRSM 158
            ::||.|..:::.|||||.|                     |.::....|.|.:.:||:.::|.: 
  Rat    77 KLDSDTLEIMKVPRCGVPD---------------------VGQYGYTLPGWRKYNLTYRIMNYT- 119

  Fly   159 PDA--SKVERMVQTALDVWANHSKLTFREVYSDQADIQILFARRAHG-DGYKFDGPGQVLAHAFY 220
            ||.  :.|:..:|.||.||:..:.|.|..:....|||.|.|..|.|| ....||||..||.|||.
  Rat   120 PDMTHADVDEAIQKALQVWSKVTPLMFTRISKGVADIMIAFRTRVHGWCPRHFDGPLGVLGHAFP 184

  Fly   221 PGEGRGGDAHFDADETWNFDGESDDSHGTNFLNVALHELGHSLGLAHSAIPDAVMFPWYQN---N 282
            ||.|.|||.|||.||||.    :.|..|.|...||.||.||||||:||:...|:|||.|.:   |
  Rat   185 PGLGLGGDTHFDEDETWT----TGDGEGFNLFLVAAHEFGHSLGLSHSSDQTALMFPNYVSLDPN 245

  Fly   283 EVAGNLPDDDRYGIQQLYGTKEKTWGPYKPQTTTTTTTTTTMRAMIYRADKPAYWPWNNPSNNPN 347
            :..  |..||..|||.:||                                              
  Rat   246 KYP--LSQDDINGIQSIYG---------------------------------------------- 262

  Fly   348 NDRNRARERQEEERRRQEKERRRQEEERRHQEEERRRQVEERQRQEEERWRQEQERQEEENRRRK 412
                                                                             
  Rat   263 ----------------------------------------------------------------- 262

  Fly   413 IEHKSQWERNPSKERNRPRERQEMERRRQEQERQEQERQEQEDRRRERERDRQLEWERRNRNGAR 477
                     :|||...:|                                           ||..
  Rat   263 ---------SPSKVPTKP-------------------------------------------NGNP 275

  Fly   478 EPVTPTANTTPRPTNKPYPTVHRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFIFRGPYLWRIG 542
            .|.....|.|                                :||::..|.|:...:|.:|||:.
  Rat   276 VPCACEPNLT--------------------------------FDAVTTFRREIMFLKGRHLWRVY 308

  Fly   543 TSGLYNGYPTE-IRRHWSALPENLTKVDAVYENKQRQIVFFIGREYYVFNSVMLAPGFPKPLASL 606
            :.  ..|...| |...|.:||.:|   .|.||:.:.:::.|....::|.....:.||:||.:.:|
  Rat   309 SD--ITGAEFEFIDSFWPSLPADL---QAAYESPRDEVLVFKDENFWVIRGNSVLPGYPKSIHTL 368

  Fly   607 GLPPTLTHIDASFVWGHNNRTYMTSGTLYWRIDDYTGQVELDYP-RDMSIWSGVGYNIDAAFQYL 670
            |.|..:..|||:.......:|:...|...||.|:....::..:| |.|..:.|:...:||.|| .
  Rat   369 GFPRRVKKIDAAVCDHDTKKTFFFVGIWCWRYDEMAQAMDRGFPQRIMKRFPGIRLRVDAVFQ-R 432

  Fly   671 DGKTYFFKNLGYWEFNDDRMKVAHARAKLSARRWMQCARSAN 712
            :|..|||:....:|::   ||..:....:....|..|....|
  Rat   433 NGFFYFFRGSRQFEYD---MKAKNITQVMKTNTWFLCNEPLN 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 71/163 (44%)
ZnMc_MMP 143..301 CDD:239805 71/163 (44%)
HX 513..707 CDD:238046 51/195 (26%)
Mmp27NP_001100269.1 PG_binding_1 31..86 CDD:279773 17/57 (30%)
Peptidase_M10 106..262 CDD:278824 71/162 (44%)
ZnMc_MMP 106..262 CDD:239805 71/162 (44%)
HX 277..466 CDD:238046 54/229 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 148 1.000 Domainoid score I4331
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X44
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.920

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