DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp2 and Prg4

DIOPT Version :10

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_001099432.4 Gene:Prg4 / 289104 RGDID:1308976 Length:1275 Species:Rattus norvegicus


Alignment Length:414 Identity:72/414 - (17%)
Similarity:122/414 - (29%) Gaps:141/414 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 LAHSAIPDAVMFPWYQNNEVAGNLP-DDDRYGIQQLYGTKEKTWGPYKPQTTTTTTTTTTMRAMI 328
            ||.:..|.|:     :||.....:| :.......::...||||......|||||.|..||....|
  Rat   751 LAEAPTPKAL-----ENNPKEPTVPTETPEVSKPEMTTAKEKTTEKDTTQTTTTVTPKTTTETTI 810

  Fly   329 YRADKPAYWPWNNPSNNPNNDRNRARERQEEERRRQEKERRRQEEERRHQEEERR---------R 384
            .                       ..|..|.......:.....::....|....:         .
  Rat   811 I-----------------------PEETTEPRASTTTRITSTAQDTTSPQMTTLKATTLAAKVTA 852

  Fly   385 QVEERQRQEEERWRQEQERQEEENRRRKIEHKSQWERNPSKERNRPRERQEMERRRQEQERQEQE 449
            ..||.|.:.||........:..:..:..::        |.|....|::....::..:..::....
  Rat   853 PTEEIQSKPEETTLTTPALEGSDASKTTLK--------PQKPTKAPKKPASTKKPTKAPKKPTST 909

  Fly   450 RQEQEDRRRERERDRQLEWERRNRNGAREPVTPT---------ANTTPRPTNKPYPTVHRQ---- 501
            ::.:..:                  |.:...||:         .||||.....|..||.:|    
  Rat   910 KKPKTPK------------------GRKPKTTPSPLKTSTMSEQNTTPLEVMLPTTTVPKQTPNS 956

  Fly   502 --------HH-----HHNKPRKPKP--------------------------------DSCM-TYY 520
                    |.     ...||..|:|                                :.|. ...
  Rat   957 ETAEVNPAHEDADGGEGEKPLIPRPPVLSPTAVPGTDLLVERLNPGINIHPMFSDETNICNGKPV 1021

  Fly   521 DAISIIR-GELFIFRGPYLWRIGTSGLYNGY-----PTEIRRHWSALPENLTKVDAVYE--NKQR 577
            |.::.:| |.|..|||.|.|      :.|.:     |..|...| .:|   :.:|.|:.  |.:.
  Rat  1022 DGLTTLRNGTLVAFRGHYFW------MLNPFRPPSPPRRITEVW-GIP---SPIDTVFTRCNCEG 1076

  Fly   578 QIVFFIGREYYVFNSVMLAPGFPK 601
            :..||...:|:.|.:.::..|:||
  Rat  1077 KTFFFKDSQYWRFTNDVMDAGYPK 1100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 PG_binding_1 52..103 CDD:460223
Peptidase_M10 143..301 CDD:425668 7/36 (19%)
HX 513..707 CDD:238046 26/130 (20%)
Prg4NP_001099432.4 SO 26..68 CDD:197571
Somatomedin_B 69..106 CDD:460034
PHA03247 <315..724 CDD:223021
HX 1013..1274 CDD:238046 25/98 (26%)
Blue background indicates that the domain is not in the aligned region.

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