DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp2 and Mmp17

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_017453997.1 Gene:Mmp17 / 288626 RGDID:1311541 Length:592 Species:Rattus norvegicus


Alignment Length:728 Identity:211/728 - (28%)
Similarity:305/728 - (41%) Gaps:215/728 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LSLPPEGSHSTAATRSKKAKTAISEDIMYNYLMQFDYLPKSDLETGALRTEDQLKEAIRSLQSFG 87
            |:|...|..:..|.|::.....:      .:|.:|.|||.:|..||.|:|:::|.:||.::|.||
  Rat    30 LALAAHGGCAAPAPRAEDLSLGV------EWLSKFGYLPPADPATGQLQTQEELSKAITAMQQFG 88

  Fly    88 NITVTGEIDSATARLIQKPRCGVGDRRSADSFSPDNLYHEIGSNVRVRRFALQGPKWSRTDLTWS 152
            .:..||.:|.||..|::.|||.:.|.             .:|:..|.||......|||:.:|:|.
  Rat    89 GLETTGILDEATLALMKTPRCSLPDL-------------PLGAQSRRRRQTPLPTKWSKRNLSWR 140

  Fly   153 MVNRSMPDASKVER-----MVQTALDVWANHSKLTFREVYSDQADIQILFARRAHGDGYKFDGPG 212
            :  |:.|..|.:.|     ::..||.||::.:.|.|.||..:.|||||.|::..|.|||.|||||
  Rat   141 V--RTFPRDSPLGRDTVRALMYYALKVWSDITPLNFHEVAGNMADIQIDFSKADHNDGYPFDGPG 203

  Fly   213 QVLAHAFYPGEGR-GGDAHFDADETWNFDGE---SDDSHGTNFLNVALHELGHSLGLAHSAIPDA 273
            ..:||||:||:.. .||.|||.||.|.|...   |.|:||.:...||:||.||::||:|.|.|.:
  Rat   204 GTVAHAFFPGDHHTAGDTHFDDDEAWTFRSSVSASSDAHGMDLFAVAVHEFGHAIGLSHVAAPSS 268

  Fly   274 VMFPWYQNNEVAGNLPDDDRYGIQQLYGTKEKTWGPYKPQTTTTTTTTTTMRAMIYRADKPAYWP 338
            :|.|:||     |.:.|..|||:            ||                            
  Rat   269 IMQPYYQ-----GPVGDPLRYGL------------PY---------------------------- 288

  Fly   339 WNNPSNNPNNDRNRARERQEEERRRQEKERRRQEEERRHQEEERRRQVEERQRQEEERWRQEQER 403
                                                                             
  Rat   289 ----------------------------------------------------------------- 288

  Fly   404 QEEENRRRKIEHKSQWERNPSKERNRPRERQEMERRRQEQERQEQERQEQEDRRRERERDRQLEW 468
                                                              |||.|        .|
  Rat   289 --------------------------------------------------EDRVR--------VW 295

  Fly   469 ERRNRNGAREPVTPTAN-TTPRPTNKPYPTVHRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFI 532
            :   ..|.||.|:|||. .||.|...|.......:.....|:|..|..|..::||::.||||.|.
  Rat   296 Q---LYGVRESVSPTAQLDTPEPEEPPLLPEPPNNRSSTPPQKDVPHRCTAHFDAVAQIRGEAFF 357

  Fly   533 FRGPYLWRIGTS-GLYNGYPTEIRRHWSALPENLTKVDAVYE-NKQRQIVFFIGREYYVFNSVML 595
            |:|.|.||:... .|.:..|.::.|.|..||.:|..|||||| ....:||||.|..|:||....:
  Rat   358 FKGKYFWRLTRDRHLVSLQPAQMHRFWRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNV 422

  Fly   596 APGFPKPLASLGLPPTLTHIDASFVWGHNNRTYMTSGTLYWRIDDYTGQVELDYPRDMSIWSGVG 660
            ..|:|:|::...|||  ..|||.|.|.||:|||.....||||.||:|.:::..||....:|.||.
  Rat   423 EEGYPRPVSDFSLPP--GGIDAVFSWAHNDRTYFFKDQLYWRYDDHTRRMDPGYPAQGPLWRGVP 485

  Fly   661 YNIDAAFQYLDGKTYFFKNLGYWEFNDDRMKVAHARAKLSARRWMQCARSANEVDDEQRWTASLV 725
            ..:|.|.::.||.:|||:...||:..|..::.|....:.:||.|:.|.....:.:|        |
  Rat   486 SVLDDAMRWSDGASYFFRGQEYWKVLDGELEAAPGYPQSTARDWLVCGEQLADAED--------V 542

  Fly   726 SEGEETGRSGSRE 738
            ..|.: ||||:::
  Rat   543 GPGPQ-GRSGAQD 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 71/166 (43%)
ZnMc_MMP 143..301 CDD:239805 71/166 (43%)
HX 513..707 CDD:238046 77/195 (39%)
Mmp17XP_017453997.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I11545
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H22669
Inparanoid 1 1.050 374 1.000 Inparanoid score I2037
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X44
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.970

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