DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mmp2 and zmp-2

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_497594.1 Gene:zmp-2 / 175383 WormBaseID:WBGene00019212 Length:519 Species:Caenorhabditis elegans


Alignment Length:564 Identity:136/564 - (24%)
Similarity:201/564 - (35%) Gaps:172/564 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LLALFAQSMCIQELSLPPEGSHSTAATR----SKKAKTAISEDIM---------YNYLMQFDYLP 61
            :|:||..:      ...|...||...|:    .:.....:.||.:         |.||...|:  
 Worm    17 ILSLFTLA------HTAPTTQHSRTTTQLRLEDEDGGGGVDEDSIHFVKGQMEKYGYLKGIDH-- 73

  Fly    62 KSDLETGALRTEDQLKEAIRSLQSFGNITVTGEIDSATARLIQKPRCGVGDRRSADSFSPDNLYH 126
                     .:..:.::|:...|....:..||.:|..|.....||||...|.|...:        
 Worm    74 ---------SSPQEFRQALMFFQEVLEVEQTGNVDEMTVEAASKPRCTQTDVRQEQT-------- 121

  Fly   127 EIGSNVRVRRFAL-QGPKWSRTD-----LTWSMVNRSMPDASKVE--RMVQTALDVWANHS---- 179
                 .|.:||.| :..||:...     |.| .::....|..::|  ::|:.|..:|::.|    
 Worm   122 -----KRTKRFTLSKRAKWAHASGQSVTLKW-YISDYTSDIDRLETRKVVEKAFKLWSSQSYIKN 180

  Fly   180 ----KLTFREVYS-DQADIQILFARRAHGDGYKFDGPG---------QVLAHAFYPGEGR--GGD 228
                .|||:|..| |:|||.||:|...|||.:.|||..         .||||.|:||..|  .||
 Worm   181 EKKVTLTFQEASSKDEADINILWAEGNHGDEHDFDGANGKIEGNKKENVLAHTFFPGYARPLNGD 245

  Fly   229 AHFDADETWNFDGESDDSHGTN---FLNVALHELGHSLGLAHSAIPDAVMFPWYQN---NEVAGN 287
            .|||..|.|..|.: ...||:|   |..|..||:||:|||.||...||:|.|:|:|   ||:  .
 Worm   246 IHFDDAEDWEIDVD-QVGHGSNKRFFPYVLAHEIGHALGLDHSQKADALMHPYYKNVPINEI--Q 307

  Fly   288 LPDDDRYGIQQLYG------------------------------------TKEKTWGPYK----- 311
            |..||:.|:...||                                    |.:|:   :|     
 Worm   308 LDIDDKCGVIWNYGGASDFCLYVWLMSQIVEAHNSSAQNNHGVGSITSSRTNKKS---FKSEGFF 369

  Fly   312 ------PQTTTTTTTTTTMRAMIYRADKPAYWPWNNPSNNPNNDRNRARERQEEERRRQEKERRR 370
                  |.:|.|.|....||    ..||.:|   ...|..|....|.:.:|...|::........
 Worm   370 LFQLKFPHSTLTHTDDVVMR----EKDKRSY---RGDSKIPKCSSNNSSQRTLAEKKLTLGLHLS 427

  Fly   371 QEEERRHQEEERRRQVEERQRQEEERWRQEQERQEEENRRRKIEHKSQWERNPSKERNRPRERQE 435
            :.:.:|:.|..                            ...:.....|..||:   :...|..|
 Worm   428 EADAKRYTEMV----------------------------CNFLAGLHMWRTNPN---HHASESLE 461

  Fly   436 MERRRQEQERQEQERQEQEDRRRERERDRQLEWERRNRNGAREP 479
            .|.:...||......:....||..|..:.|.|   |:..|..:|
 Worm   462 KEYKGVSQEMGTFSGKSIAVRRLIRHAEHQKE---RSEKGPLDP 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 70/190 (37%)
ZnMc_MMP 143..301 CDD:239805 70/190 (37%)
HX 513..707 CDD:238046
zmp-2NP_497594.1 ZnMc_MMP 134..321 CDD:239805 70/190 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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