DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mmp2 and mmp24

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_031750429.1 Gene:mmp24 / 100492405 XenbaseID:XB-GENE-1009940 Length:633 Species:Xenopus tropicalis


Alignment Length:734 Identity:203/734 - (27%)
Similarity:301/734 - (41%) Gaps:212/734 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LFAQSMCIQELSLPP----------EGSHSTAATRSK---KAKTAISEDIMY--NYLMQFDYLPK 62
            |.|.|....||.||.          :.|..|:|..|:   ::.|:|::...:  .:|..:.||..
 Frog    17 LAAASWLASELQLPATELPFSAAELQLSAVTSAWSSRVFARSGTSITDGTPHVPRWLKTYGYLLP 81

  Fly    63 SDLETGALRTEDQLKEAIRSLQSFGNITVTGEIDSATARLIQKPRCGVGDRRSADSFSPDNLYHE 127
            .|:...||::...::.|:.::|.|..|.||||:|..|...::||||||.|            :..
 Frog    82 YDIRISALQSGKAMQSAVSAMQQFYGIPVTGELDQMTIEWMKKPRCGVPD------------HPH 134

  Fly   128 IGSNVRVRRFALQGPKWSRTDLTWSMVNRSMPDASKVE--RMVQTALDVWANHSKLTFREV-YSD 189
            :....|.:|:||.|.||.:..:|:|:.|.: |...:::  :.::.|.|||...:.|||.|: ||:
 Frog   135 LSHRRRNKRYALTGQKWRQKHITYSIHNYT-PKVGELDTRKAIRQAFDVWQKVTPLTFEEIPYSE 198

  Fly   190 ------QADIQILFARRAHGDGYKFDGPGQVLAHAFYPGEGRGGDAHFDADETWNFDGESDDSHG 248
                  :|||.|.||...|||...|||.|..||||::||.|.|||.|||:||.|.....:.|  |
 Frog   199 IKNERKEADIMIFFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNSNHD--G 261

  Fly   249 TNFLNVALHELGHSLGLAHSAIPDAVMFPWYQNNEVAG-NLPDDDRYGIQQLYGTKEKTWGPYKP 312
            .:...||:|||||:|||.||..|.|:|.|:||..|... .||.||..|||::||...:|..|.:|
 Frog   262 NDLFLVAVHELGHALGLEHSNDPSAIMAPFYQYMETHNFKLPQDDLQGIQKIYGPPAETMEPTRP 326

  Fly   313 QTTTTTTTTTTMRAMIYRADKPAYWPWNNPSNNPNNDRNRARERQEEERRRQEKERRRQEEERRH 377
            ..|.                                                       ...|.|
 Frog   327 LPTL-------------------------------------------------------PPRRIH 336

  Fly   378 QEEERRRQVEERQRQEEERWRQEQERQEEENRRRKIEHKSQWERNPSKERNRPRERQEMERRRQE 442
            ...||:.                                   ||.|     ||            
 Frog   337 STSERKH-----------------------------------ERQP-----RP------------ 349

  Fly   443 QERQEQERQEQEDRRRERERDRQLEWERRNRNGAREPVTPTANTTPRPT--NKPYPTVHRQHHHH 505
                                                         |||.  :||..|..|     
 Frog   350 ---------------------------------------------PRPPLGDKPPSTGSR----- 364

  Fly   506 NKPRKPKPDSCMTYYDAISIIRGELFIFRGPYLWRIGTSGLYNGYPTEIRRHWSALPENLTKVDA 570
                   |:.|...::.:::.|||:|:|:..:.||:..:.:..|||.:|.:.|..||   .|:||
 Frog   365 -------PNICDGNFNTVALFRGEMFVFKDRWFWRLRNNKVQEGYPMQIEQFWKGLP---PKIDA 419

  Fly   571 VYENKQRQIVFFIGREYYVFNSVMLAPGFPKPLASLGLPPTLTHIDASFVWGHNNRTYMTSGTLY 635
            .||....:.|||.|.:|:||..|...||:|..|..||.......||.:..|...::||...|..|
 Frog   420 AYERSDGKFVFFKGDKYWVFKEVTAEPGYPHSLVELGSCLPREGIDTALRWETFSKTYFFKGDRY 484

  Fly   636 WRIDDYTGQVELDYPRDMSIWSGVGYNIDAAFQYLDGK-TYFFKNLGYWEFNDDRMKVAHARAKL 699
            ||.::.....:..||:.::||.|:..:...||...:|. |||:|...||:|::.|:.|.....:.
 Frog   485 WRYNEEKRAADPGYPKPITIWKGIPESPQGAFVSKEGSYTYFYKGREYWKFDNQRLTVEPGYPRS 549

  Fly   700 SARRWMQCARSANEVDDEQ 718
            ..:.||.|  :..|||:.:
 Frog   550 IVKDWMGC--NQKEVDNSK 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 73/167 (44%)
ZnMc_MMP 143..301 CDD:239805 73/167 (44%)
HX 513..707 CDD:238046 63/194 (32%)
mmp24XP_031750429.1 PG_binding_1 71..122 CDD:396175 16/50 (32%)
Peptidase_M10 150..315 CDD:395334 73/167 (44%)
HX 365..557 CDD:238046 63/194 (32%)
DUF3377 563..633 CDD:403153 1/4 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 145 1.000 Domainoid score I4538
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 1 1.000 - - FOG0000840
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.110

Return to query results.
Submit another query.