DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mmp2 and mmp21l

DIOPT Version :10

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_002939653.2 Gene:mmp21l / 100492075 XenbaseID:XB-GENE-29071363 Length:616 Species:Xenopus tropicalis


Alignment Length:691 Identity:150/691 - (21%)
Similarity:217/691 - (31%) Gaps:290/691 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 EAIRSLQSFGNITVTGEIDSATARLIQKPRCGVGD------RRSA-----DSFSPDNLYHEIGSN 131
            ::::..|....:|.||.:||||...:.||||||.|      |::|     |:.|..:...:.|:.
 Frog   121 DSLKKFQDANGLTATGVLDSATKIAMNKPRCGVPDFKVASRRKNATLSFTDADSNSHNSSQAGAT 185

  Fly   132 VRVRRFAL--------------------QGPKWSRTDLTWSMVNR--SMPDASKVER-MVQTALD 173
            .|.:|..|                    ...::||..:.|.::..  ||....:.:| ::..|..
 Frog   186 QRRKRSFLSKMVEHYRQKREAKDTMGSSNSKRFSRNTVKWRLMGEGYSMQLTIQQQRAILALAFR 250

  Fly   174 VWANHSKLTF-REVYSDQADIQILFARRAH-GDGYKFDGPGQVLAHAFYPGEGRGGDAHFDADET 236
            :|:....|.| .::..|..||:|.|....| |....|||.||..|||:|.     ||.|||.|| 
 Frog   251 MWSEVVPLLFVEDLTGDDIDIRIGFGTGQHLGCSQAFDGVGQQFAHAWYL-----GDIHFDDDE- 309

  Fly   237 WNFDGESDDSHGTNFLNVALHELGHSLGLAHSAIPDAVMFPWYQNNEVAGNLPDDDRYGIQQLYG 301
             :|.|.|.: ||.:.|.||:||:||:|||:|.....:||.|.|...|....|..:||..:|:.||
 Frog   310 -HFVGPSSE-HGISLLKVAVHEIGHALGLSHINREGSVMQPNYIPQERHFELDWEDRKAVQEKYG 372

  Fly   302 T-------------KEKTWGPYKPQTTTTTTTTTTMRAMIYRADKPAYWPWNNPSNNPNNDRNRA 353
            .             ||:|     |:..|.....|      |......||.:.|.||         
 Frog   373 ACDGSFSTVFDWIRKERT-----PRGETVYRFNT------YFFKTNWYWMYENKSN--------- 417

  Fly   354 RERQEEERRRQEKERRRQEEERRHQEEERRRQVEERQRQEEERWRQEQERQEEENRRRKIEHKSQ 418
                                                                             
 Frog   418 ----------------------------------------------------------------- 417

  Fly   419 WERNPSKERNRPRERQEMERRRQEQERQEQERQEQEDRRRERERDRQLEWERRNRNGAREPVTPT 483
                                                                |.|.|...|:...
 Frog   418 ----------------------------------------------------RTRFGDPLPIKGG 430

  Fly   484 ANTTPRPTNKPYPTVHRQHHHHNKPRKPKPDSCMTY-YDAISIIRGELFIFRGPYLWRIGTSGLY 547
            .|..|......|  ||                ..|: .||       .:.|:|..:||      |
 Frog   431 WNGIPDKDIDAY--VH----------------VWTWNIDA-------QYFFKGTQVWR------Y 464

  Fly   548 N--------------GYPTEIRRHWSALPENLTKVDAVYEN-KQRQIVFFIGREYYVF--NSVML 595
            :              .||..|...:..:|   :.|||.|.| |:|.|.||.|.....|  :....
 Frog   465 DPDKDRAFTEDWRKVKYPQPIADVFPGIP---SPVDAAYFNKKERFIYFFRGNNVTAFSVDKNQK 526

  Fly   596 APGFPKPLASLGLPPTLTHIDASFVWGHNNRTYMTSGTLYWRIDDYTGQVELDYPRDMSIWSGVG 660
            ...|||.:..: .||    :|.:                             |:||.        
 Frog   527 VEKFPKSIIDV-FPP----VDPN-----------------------------DHPRG-------- 549

  Fly   661 YNIDAA-FQYLDGKTYFFKNLGYWEFNDDRMKVAHARAKLS 700
             ||||. |.|....|:|.|:..||:...|:.:..::...|:
 Frog   550 -NIDAVYFSYSYQTTFFIKDKYYWKMVIDQERQTNSSLPLN 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 PG_binding_1 52..103 CDD:460223 8/24 (33%)
Peptidase_M10 143..301 CDD:425668 58/162 (36%)
HX 513..707 CDD:238046 46/207 (22%)
mmp21lXP_002939653.2 PG_binding_1 <123..146 CDD:460223 8/22 (36%)
ZnMc_MMP 217..372 CDD:239805 58/162 (36%)
HX 373..602 CDD:413329 67/431 (16%)

Return to query results.
Submit another query.