DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp2 and LOC100489735

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_002934969.3 Gene:LOC100489735 / 100489735 -ID:- Length:459 Species:Xenopus tropicalis


Alignment Length:683 Identity:174/683 - (25%)
Similarity:248/683 - (36%) Gaps:257/683 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 TRSKKAKTAISEDIMYNYLMQFDYLPKSDLETGALRTEDQLKEAIRSLQSFGNITVTGEIDSATA 100
            |.:.|...|.:::    ||.:| |..|.|   |.:.....| |.||.:|....:.||..:|..|.
 Frog    23 TDTDKNNEAFAKE----YLGKF-YKSKDD---GKMSRSGFL-EKIRRMQDVLGLEVTARMDEKTI 78

  Fly   101 RLIQKPRCGVGDRRSADSFSPDNLYHEIGSNVRVRRFAL--QGPKWSRTDLTWSMVN-RSMPDAS 162
            ..:::|||||.:                     :.||:.  :.|.|.:.|||:.::| .|.....
 Frog    79 EAMKQPRCGVPN---------------------IGRFSAFPRNPVWKKKDLTYRILNYTSHMTRD 122

  Fly   163 KVERMVQTALDVWANHSKLTFREVYSDQADIQILFARRAHGDGYKFDGPGQVLAHAFYPGEGRGG 227
            :|:|.::.|..||::...|||..:|...:||::.||...|.|.:.||||..:|||.|.||:..||
 Frog   123 EVDRAIEKAFKVWSDVVPLTFTRIYDRVSDIEMSFASGDHKDAFPFDGPSGILAHTFAPGDNTGG 187

  Fly   228 DAHFDADETWNFDGESDDSHGTNFLNVALHELGHSLGLAHSAIPDAVMFPWYQ-NNEVAGNLPDD 291
            |.||||||||     :..|.|||...||.|||||||||.||..|:|:|:|.|. .|.....|.:|
 Frog   188 DVHFDADETW-----TSGSAGTNLFLVAAHELGHSLGLDHSNDPNALMYPTYHYTNPNTFQLSED 247

  Fly   292 DRYGIQQLYGTKEKTWGPYKPQTTTTTTTTTTMRAMIYRADKPAYWPWNNPSNNPNNDRNRARER 356
            |..||..|||.|||                                                   
 Frog   248 DIKGIHSLYGPKEK--------------------------------------------------- 261

  Fly   357 QEEERRRQEKERRRQEEERRHQEEERRRQVEERQRQEEERWRQEQERQEEENRRRKIEHKSQWER 421
                                                                             
 Frog   262 ----------------------------------------------------------------- 261

  Fly   422 NPSKERNRPRERQEMERRRQEQERQEQERQEQEDRRRERERDRQLEWERRNRNGAREPVTPTANT 486
                                                                     |||||...
 Frog   262 ---------------------------------------------------------PVTPTKAQ 269

  Fly   487 TPRPTNKPYPTVHRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFIFRGPYLWRIGTSGLYNGYP 551
            |           |...|              ..:||::.:||::..|.....|| .|:|     .
 Frog   270 T-----------HCPEH--------------ISFDAVTTVRGDIIFFENRSFWR-KTAG-----K 303

  Fly   552 TEIRRH-----WSALPENLTKVDAVYEN-KQRQIVFFIGREYYVFNSVMLAPGFPKPLASLGLPP 610
            :||.:|     |.:||.:   :||.||| |:.|::.|.|.:|:|.....:..||||.:..||.|.
 Frog   304 SEIEQHEISSFWPSLPAD---IDAAYENQKKDQVLLFKGTKYWVLRGYTVQEGFPKNIYELGFPL 365

  Fly   611 TLTHIDASFVWGHNNRTYMTSGTLYWRIDDYTGQVELDYPRDMSI-WSGVGYNIDAAFQYLDGKT 674
            |:|.|||:.......|||......||..::.|.|::.:.|:.:|. :.|||..::|||: .:|..
 Frog   366 TVTQIDAAVHDDETGRTYFFINDRYWSYNEETSQMDKESPQRISKGFPGVGNKVEAAFR-SNGML 429

  Fly   675 YFFKNLGYWEFNDDRMKVAHARAKLSARRWMQC 707
            |.|.....:||:....||...   |....|:.|
 Frog   430 YLFSGNQQYEFSTTNRKVTRL---LKYTSWLNC 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 71/159 (45%)
ZnMc_MMP 143..301 CDD:239805 71/159 (45%)
HX 513..707 CDD:238046 62/200 (31%)
LOC100489735XP_002934969.3 Peptidase_M10 103..257 CDD:395334 71/158 (45%)
HX 272..459 CDD:238046 63/213 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 145 1.000 Domainoid score I4538
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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