DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mmp2 and mmp28

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_002933877.3 Gene:mmp28 / 100488826 XenbaseID:XB-GENE-984024 Length:510 Species:Xenopus tropicalis


Alignment Length:676 Identity:155/676 - (22%)
Similarity:242/676 - (35%) Gaps:216/676 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 ISEDIMYN---YLMQFDYLPKSDLETGALRTEDQLKEAIRSLQSFGNITVTGEIDSATARLIQKP 106
            |||:.:..   :|.::.||.    ||....:..||..|:|..|...::.|:|::|.:|.:.:.:|
 Frog    37 ISEETLQTAQVFLEKYGYLK----ETTKHHSGKQLASAVREFQWLSHLPVSGDLDFSTVKQMIQP 97

  Fly   107 RCGVGDRRSADSFSPDNLYHEIGSNVRVRRFALQGPKWSRTDLTWSMVNRSMP---DASKVERMV 168
            |||:.|..|.:......       ..|.:|:..:..||.:..||:.:||  .|   ...:|.:.|
 Frog    98 RCGMKDDESLELVKSHR-------QQRKKRYISKSKKWYKQHLTYQIVN--WPWYLSQHQVRQAV 153

  Fly   169 QTALDVWANHSKLTFREVYSDQADIQILFARRAHGD--GYKFDGPGQVLAHAFYPGEGRGGDAHF 231
            :.|..:|:|.|.|||.|...|.|||::.|....|.|  |..|||||..|||||:|   |.|:|||
 Frog   154 KAAFQLWSNVSSLTFSEALRDPADIRLAFFHGDHNDGAGNAFDGPGGALAHAFFP---RRGEAHF 215

  Fly   232 DADETWNFDGESDDSHGTNFLNVALHELGHSLGLAHSAIPDAVMFPWYQ--NNEVAGNLPDDDRY 294
            |:.|.|:.:|:     |.|...|..||:||:|||.||...:|:|.|:|:  |.:...|.  ||..
 Frog   216 DSAEHWSLNGK-----GQNLFVVLAHEIGHTLGLQHSPFKNALMSPYYKKLNKDYVLNF--DDVL 273

  Fly   295 GIQQLYGTKEKTWGPYKPQTTTTTTTTTTMRAMIYRADKPAYWPWNNPSNNPNNDRNRARERQEE 359
            .||.|||..                                      ||.|              
 Frog   274 AIQNLYGAP--------------------------------------PSGN-------------- 286

  Fly   360 ERRRQEKERRRQEEERRHQEEERRRQVEERQRQEEERWRQEQERQEEENRRRKIEHKSQWERNPS 424
                                   ..|:..:|....:.|..|                        
 Frog   287 -----------------------LVQLPGKQFAFFQDWSPE------------------------ 304

  Fly   425 KERNRPRERQEMERRRQEQERQEQERQEQEDRRRERERDRQLEWERRNRNGAREPVTPTANTTPR 489
                                                                             
 Frog   305 ----------------------------------------------------------------- 304

  Fly   490 PTNKPYPTVHRQHHHHNKPRKPKPDSCMTYYDAIS-IIRGELFIFRGPYLWRIGTSGLYNGYPTE 553
                       .|...|...| :...|.:.:|||: .::..|:||:|.:.|.:...|..:. |..
 Frog   305 -----------SHEDTNSGMK-QSSYCHSIFDAITWDLKHTLYIFKGRHFWTVSLDGKISP-PQT 356

  Fly   554 IRRHWSALPENLTKVDAVYENKQRQIVFFIGREYYVFNSVMLAPGFPKPLASLGLPPTLTHIDAS 618
            ::..|..||..:..  ||......:..||.|...:.:...:|..|||:..:..|||   ...|.:
 Frog   357 LQMRWKKLPSYIEA--AVVSGFDGKFYFFKGGRCWRYKDSILEEGFPQKCSMNGLP---RRPDTA 416

  Fly   619 FVWGHNNRTYMTSGTLYWRIDDYTGQVELDYPRDMSIWSGVGYNIDAAFQYLDGKTYFFKNLGYW 683
            ..:.......:..|:.|:.:::.:..||..|||.:..|.||..|..:...:.:|..||||...||
 Frog   417 LYFQPLGHLVIFKGSKYYVVNEESLTVEPYYPRTLQDWKGVPANSHSVLTHPNGAVYFFKGDKYW 481

  Fly   684 EFNDDRMKVAHARAKLSARRWMQCAR 709
            .|:.:::||..:........|:.|.:
 Frog   482 IFDQNKLKVTTSGKWAEDLSWIGCKK 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 68/164 (41%)
ZnMc_MMP 143..301 CDD:239805 68/164 (41%)
HX 513..707 CDD:238046 49/194 (25%)
mmp28XP_002933877.3 PG_binding_1 38..94 CDD:396175 16/59 (27%)
ZnMc_MMP 127..280 CDD:239805 68/164 (41%)
HX 317..505 CDD:238046 49/193 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

Return to query results.
Submit another query.