DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp2 and mmp25

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_031749610.1 Gene:mmp25 / 100379875 XenbaseID:XB-GENE-5944489 Length:545 Species:Xenopus tropicalis


Alignment Length:729 Identity:214/729 - (29%)
Similarity:301/729 - (41%) Gaps:231/729 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 ISEDIMYNYLMQFDYLPKSDLETGALRTEDQLKEAIRSLQSFGNITVTGEIDSATARLIQKPRCG 109
            ||:.:  ::|.::.|||..|..:...:|.:.|:||::::|....:..|||:|.||.|::.||||.
 Frog    23 ISKGV--DWLTRYGYLPPPDPFSARQQTLEGLREAVKAMQRVAGLPETGELDDATVRMMNKPRCS 85

  Fly   110 VGDRRSADSFSPDNLYHEIGSNVRVRRFALQGPKWSRTDLTWSMVNRSMPDASKVER-MVQTALD 173
            :          ||.:....|.:.|.:|:||.|..|.:..|||.:.|.....:..|.| ::.|||.
 Frog    86 L----------PDIIMRPEGRSRRNKRYALSGSVWDKKLLTWRLENSPNTMSQDVSRTLIGTALA 140

  Fly   174 VWANHSKLTFREVYSDQADIQILFARRAHGDGYKFDGPGQVLAHAFYPGEG-RGGDAHFDADETW 237
            ||:..::|.|||. .:|.||::.|...:|||||.|||.|..|.|||:||.| |.|:.|.||||:|
 Frog   141 VWSKETQLQFRET-REQPDIRVEFVTGSHGDGYPFDGQGGTLGHAFFPGVGERAGETHMDADESW 204

  Fly   238 NFDGESDDSHGTNFLNVALHELGHSLGLAHSAIPDAVMFPWYQNNEVAGN-----LPDDDRYGIQ 297
            :::.|    .||:...||:||.||||||.||:..:::|.|:||.  ..|:     ||.||..|||
 Frog   205 SYNTE----EGTDLFAVAVHEFGHSLGLYHSSSENSIMKPYYQG--TVGDPSRYRLPPDDVDGIQ 263

  Fly   298 QLYGTKEKTWGPYKPQTTTTTTTTTTMRAMIYRADKPAYWPWNNPSNNPNNDRNRARERQEEERR 362
            .|||                                                             
 Frog   264 TLYG------------------------------------------------------------- 267

  Fly   363 RQEKERRRQEEERRHQEEERRRQVEERQRQEEERWRQEQERQEEENRRRKIEHKSQWERNPSKER 427
                                                                             
 Frog   268 ----------------------------------------------------------------- 267

  Fly   428 NRPRERQEMERRRQEQERQEQERQEQEDRRRERERDRQLEWERRNRNGAREPVTPTANTTPRPTN 492
                                     |.|                  :|.|.|||||....  |..
 Frog   268 -------------------------QPD------------------SGHRPPVTPTRRAL--PPR 287

  Fly   493 KPYPTVHRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFIFRGPYLWRIGTS-GLYNGYPTEIRR 556
            .|.|          .||.|.||.|.|.:|||:.||||.|.|:..|.||:.:| .|.:..|..:.|
 Frog   288 GPSP----------GPRLPFPDRCSTNFDAIANIRGEAFFFKNRYFWRVQSSRQLVSLNPAHLNR 342

  Fly   557 HWSALPENLTKVDAVYE-NKQRQIVFFIGREYYVFNSVMLAPGFPKPLASLGLPPTLTHIDASFV 620
            .|..||.:|.|:||||| ....:|||..|..|:||...::.||:|:|||..||  ....:||:||
 Frog   343 FWLGLPPDLPKLDAVYERTNDSKIVFISGTSYWVFKDTLVEPGYPRPLADFGL--NTDGVDAAFV 405

  Fly   621 WGHNNRTYMTSGTLYWRIDDYTGQVELDYPRDMSIWSGVGYNIDAAFQYLDGKTYFFKNLGYWEF 685
            |.||.:||.....|:||.|:..||::..||:|.|:|.||..|||....:.:|.|||||...||:|
 Frog   406 WKHNGKTYFFRKNLFWRFDEKRGQMDSGYPKDSSLWQGVPPNIDDIISWENGDTYFFKGTQYWKF 470

  Fly   686 NDDRMKVAHARAKLSARRWMQCARSANEVDDEQRWTASLVSEGEE---------TGRSGSRELRI 741
            ....::......:.:|..||.|......|..:       ..||.:         .||:.:.|:. 
 Frog   471 QGGNVEADPGYPRSTALNWMYCPLEGPAVPTD-------APEGRDQRGCSCTCTDGRNSASEIG- 527

  Fly   742 NHFILSILLLAIAN 755
               ||....||.|:
 Frog   528 ---ILGAAWLAFAS 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 72/164 (44%)
ZnMc_MMP 143..301 CDD:239805 72/164 (44%)
HX 513..707 CDD:238046 82/195 (42%)
mmp25XP_031749610.1 PG_binding_1 29..79 CDD:396175 17/49 (35%)
ZnMc_MMP 110..267 CDD:239805 72/163 (44%)
HX 298..492 CDD:238046 82/195 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 47 1.000 Domainoid score I11824
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 358 1.000 Inparanoid score I2167
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3504
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.000

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