DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp2 and mmp19

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_031753026.1 Gene:mmp19 / 100127631 XenbaseID:XB-GENE-5932824 Length:476 Species:Xenopus tropicalis


Alignment Length:713 Identity:182/713 - (25%)
Similarity:262/713 - (36%) Gaps:258/713 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YVLATLLALFAQSMCIQELSLPPEGSHSTAATRSKKAKTAISEDIMYNYLMQFDYLPKSDLETGA 69
            ::|...|..|..:|.|:    |..|         ::||         .||.||.||.| .||:. 
 Frog     8 FLLLGTLPFFVYAMHIE----PSSG---------EEAK---------RYLQQFGYLQK-PLESD- 48

  Fly    70 LRTED----QLKEAIRSLQSFGNITVTGEIDSATARLIQKPRCGVGDRRSADSFSPDNLYHEIGS 130
              |||    :::||:|..|...::..||.:|..|...:::|||||     .|.|           
 Frog    49 --TEDFSSEEVQEALRIFQLSTHLPGTGVLDEDTIDKMRQPRCGV-----EDPF----------- 95

  Fly   131 NVRVRRFALQGPKWSRTDLTWSMVNRSMPDAS--KVERMVQTALDVWANHSKLTFREVYSDQADI 193
            |.:..|:.|.| :|.:.:||:.:.|.: ||.|  .....:......|::.:.|||:||...:|||
 Frog    96 NQKTLRYLLLG-RWRKKNLTYRIYNYT-PDMSLAAARSAILAGFKYWSDVTPLTFKEVTRGRADI 158

  Fly   194 QILFARRAHGDGYKFDGPGQVLAHAFYPGEGRGGDAHFDADETWNFDGESDDSHGTNFLNVALHE 258
            :|.|.||.:|....|||||:|||||..|   ..|..|||.||.|. :|..:   |.|...:|.||
 Frog   159 RISFHRRGNGCSRPFDGPGKVLAHADIP---ELGTVHFDEDELWT-EGTYE---GVNLRIIAAHE 216

  Fly   259 LGHSLGLAHSAIPDAVMFPWYQNNEVAGNLPDDDRYGIQQLYGTKEKTWGPYKPQTTTTTTTTTT 323
            |||:|||.||....|:|.|.|...:....|.|||..|||.|||.|:|.                 
 Frog   217 LGHALGLGHSRFRSALMAPIYFGYKPNFRLHDDDVKGIQALYGKKDKI----------------- 264

  Fly   324 MRAMIYRADKPAYWPWNNPSNNPNNDRNRARERQEEERRRQEKERRRQEEERRHQEEERRRQVEE 388
                                                                   |||.....||
 Frog   265 -------------------------------------------------------EEEEVVTTEE 274

  Fly   389 RQRQEEERWRQEQERQEEENRRRKIEHKSQWERNPSKERNRPRERQEMERRRQEQERQEQERQEQ 453
                                                                             
 Frog   275 ----------------------------------------------------------------- 274

  Fly   454 EDRRRERERDRQLEWERRNRNGAREPVTPTANTTPRPTNKPYPTVHRQHHHHNKPRKPKPDSCMT 518
                                        |..:..|.||:.                  .||.|..
 Frog   275 ----------------------------PAISAEPTPTSL------------------TPDPCND 293

  Fly   519 YYDAISI-IRGELFIFRGPYLWRI---GTSGLYNGYPTEIRRHWSALPENLTKVDAVYENKQRQI 579
            ..|||.: ..|:.:.|:|.|:|.|   |.|.|     ..|:..|..||.|:..  ||:..:.::.
 Frog   294 NLDAIILGPYGKTYAFKGDYVWTITDFGISPL-----IRIQSLWKGLPGNIDA--AVHSPRTQRT 351

  Fly   580 VFFIGREYYVFNSVMLAPGFPKPLASLGLPPTLTHIDASFVWGHNNRTYMTSGTLYWRIDDYTGQ 644
            .||.|.:.:|:.:..|.||:||.:..  :||   :|:|:..|..|.:.::..|..||:.|: .|.
 Frog   352 YFFKGDKLWVYTNFKLNPGYPKLITR--VPP---NINAALYWEVNKKIFLFKGDGYWQWDE-LGW 410

  Fly   645 VELDYPRDMSIWSGVGYNIDAAFQYLDGKTYFFKNLGYWEFNDDRMKVAHARAKLSARRWMQC 707
            ..|...:..|:::|:...:|||..:.:||.||||...||..| .:::|........|.|||||
 Frog   411 SNLSSKKISSLFTGIPSQLDAAVTWKNGKIYFFKGDKYWRVN-KQLRVERGYPLSKAERWMQC 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 65/159 (41%)
ZnMc_MMP 143..301 CDD:239805 65/159 (41%)
HX 513..707 CDD:238046 62/197 (31%)
mmp19XP_031753026.1 PG_binding_1 29..84 CDD:396175 22/67 (33%)
ZnMc_MMP 107..259 CDD:239805 65/159 (41%)
HX 288..472 CDD:238046 62/197 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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