DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp2 and mmp13b

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_001345507.1 Gene:mmp13b / 100006896 ZFINID:ZDB-GENE-030131-6152 Length:461 Species:Danio rerio


Alignment Length:723 Identity:180/723 - (24%)
Similarity:267/723 - (36%) Gaps:280/723 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KYVLATLLALFAQSMCIQELSLPPEGSHSTAATRSKKAKTAISEDIMYNYLMQFDYLPKSDLETG 68
            |.||..::|.::.:..|               :..:|.|..:::    .||.:|..:|......|
Zfish     4 KTVLLLVIAAYSSAKPI---------------STEEKDKAVLAK----KYLQRFYGMPAGLQRPG 49

  Fly    69 ALRTEDQLKEAIRSLQSFGNITVTGEIDSATARLIQKPRCGVGDRRSADSFSPDNLYHEIGSNVR 133
              ::.|.:::.||.:|.|..:.|||::|..|..|::..||||.|....:.| |.:|         
Zfish    50 --KSSDLMQQKIREMQEFFKLEVTGKLDDKTVELMEMARCGVPDVAEYNHF-PRDL--------- 102

  Fly   134 VRRFALQGPKWSRTDLTWSMVNRSMPDASK--VERMVQTALDVWANHSKLTFREVYSDQADIQIL 196
                     ||..|::|:.::|.: ||..|  |:|.|:.||:||:..:.|.|.:.:...|||.|.
Zfish   103 ---------KWKTTNVTFRILNYT-PDLKKKVVDRAVRKALNVWSKVTPLRFTKTFDGTADIMIS 157

  Fly   197 FARRAHGDGYKFDGPGQVLAHAFYPGEGRGGDAHFDADETWNFDGESDDSHGTNFLNVALHELGH 261
            |..:.|||...||||..:||||:.||.|.|||.|||.||||     ::|.|..|...||.||.||
Zfish   158 FGTKEHGDFNPFDGPEGLLAHAYPPGIGIGGDTHFDEDETW-----TEDYHAFNLFLVAAHEFGH 217

  Fly   262 SLGLAHSAIPDAVMFPWYQNNEVAGNLP--DDDRYGIQQLYGTKEKTWGPYKPQTTTTTTTTTTM 324
            :||:|||:.|.::|:|.|   ..|...|  :||..|||.|||                       
Zfish   218 ALGMAHSSDPGSLMYPVY---SYAKGFPLSEDDIEGIQSLYG----------------------- 256

  Fly   325 RAMIYRADKPAYWPWNNPSNNPNNDRNRARERQEEERRRQEKERRRQEEERRHQEEERRRQVEER 389
                                                                             
Zfish   257 ----------------------------------------------------------------- 256

  Fly   390 QRQEEERWRQEQERQEEENRRRKIEHKSQWERNPSKERNRPRERQEMERRRQEQERQEQERQEQE 454
                                           .||..|:.:|:                       
Zfish   257 -------------------------------ENPDHEKFKPK----------------------- 267

  Fly   455 DRRRERERDRQLEWERRNRNGAREPVTPTANTTPRPTNKPYPTVHRQHHHHNKPRKPKPDSCMTY 519
                                       |.|                       |.|..|:   ..
Zfish   268 ---------------------------PIA-----------------------PEKCDPE---LS 279

  Fly   520 YDAISIIRGELFIFRGPYLWRIGTSGLYNGYP----TEIRRHWSALPENLTKVDAVYENKQRQIV 580
            :|||:.:|||..||:..:.||     |:...|    |.|:..|..:|   .||||.|||.:|.:|
Zfish   280 FDAITELRGETIIFKDRFYWR-----LHPNMPEPEQTLIKNTWPEIP---NKVDAAYENPERDVV 336

  Fly   581 -FFIGREYYVFNSVMLAPGFPKPLASLGLPPTLTHIDASFVWGHNNRTYMTSGTLYWRIDDYTGQ 644
             .|.|.:.:..|...|..|:||.:..||||.|:..|||:.......:|.:.....||..|:.||.
Zfish   337 IIFSGIKMWALNGYTLVDGYPKYIHKLGLPKTVRKIDAAVNIRDTGKTLLFVDEEYWSFDEQTGT 401

  Fly   645 VELDYPRDM-SIWSGVGYNIDAAFQYLDGKTYFFKNLGYWEFNDDRMKVAHARAK--LSARRWMQ 706
            ::..|||.: ..:.|:|..:|||..:     |.:.|| |.|         |.:.:  .|||:.::
Zfish   402 MDTGYPRSIEDDFPGIGDEVDAAAYH-----YGYLNL-YHE---------HTQFEYSYSARKVVR 451

  Fly   707 CARSANEV 714
            ..| ||.:
Zfish   452 IMR-ANSI 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 72/161 (45%)
ZnMc_MMP 143..301 CDD:239805 72/161 (45%)
HX 513..707 CDD:238046 64/201 (32%)
mmp13bXP_001345507.1 PG_binding_1 29..82 CDD:279773 15/58 (26%)
Peptidase_M10 103..256 CDD:278824 72/161 (45%)
ZnMc_MMP 103..256 CDD:239805 72/161 (45%)
HX 271..461 CDD:238046 69/215 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.020

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