DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp2 and mmp25a

DIOPT Version :9

Sequence 1:NP_995788.1 Gene:Mmp2 / 35997 FlyBaseID:FBgn0033438 Length:758 Species:Drosophila melanogaster
Sequence 2:XP_021327128.1 Gene:mmp25a / 100001739 ZFINID:ZDB-GENE-070820-22 Length:514 Species:Danio rerio


Alignment Length:652 Identity:182/652 - (27%)
Similarity:253/652 - (38%) Gaps:209/652 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 LQSFGNITVTGEIDSATARLIQKPRCGVGDRRSADSFSPDNLYHEIGSN---VRVRRFALQGPKW 144
            :|.|..|..||.:|..|..::.:|||.:.|..|.:.....|   ..|.|   ::.:|:.|...:|
Zfish     1 MQRFAGIEETGNLDQKTLEMMGRPRCSLPDTISFEELLKRN---RRGKNKVMMKKKRYTLPKMRW 62

  Fly   145 SRTDLTWSMVNRSMPDASK------VERMVQTALDVWANHSKLTFR---EVYSDQADIQILFARR 200
            .:||:||||.:...|..|.      |..::..||.||:.::.|.|.   :..|.|.||.:.|...
Zfish    63 DKTDITWSMQDFPPPSVSPALNPGLVRLILGNALRVWSENTPLRFHYSPDEPSPQTDITVTFTSG 127

  Fly   201 AHGDGYKFDGPGQVLAHAFYPGEG-RGGDAHFDADETWNFDGESDDSHGTNFLNVALHELGHSLG 264
            .|.|||.|||.|..|||||:||:| ..||.||||:|:|.:...|.||   :...||:||.||:||
Zfish   128 YHEDGYPFDGKGGALAHAFFPGKGDLAGDTHFDAEESWTYGDWSSDS---DLFTVAVHEFGHALG 189

  Fly   265 LAHSAIPDAVMFPWY-----QNNEVAGNLPDDDRYGIQQLYGTKEKTWGPYKPQTTTTTTTTTTM 324
            |.||:..|::|.|:|     :.|..  :|...||.|||.||| |:....|  |.:....||..|.
Zfish   190 LFHSSSSDSIMKPYYFSPVGEMNSY--SLTAVDRLGIQALYG-KQHNLKP--PPSVAAPTTYPTQ 249

  Fly   325 RAMIYRADKPAYWPWNNPSNNPNNDRNRARERQEEERRRQEKERRRQEEERRHQEEERRRQVEER 389
            .:..|....|.|.|                                                   
Zfish   250 FSTTYLLHPPYYPP--------------------------------------------------- 263

  Fly   390 QRQEEERWRQEQERQEEENRRRKIEHKSQWERNPSKERNRPRERQEMERRRQEQERQEQERQEQE 454
                                                                             
Zfish   264 ----------------------------------------------------------------- 263

  Fly   455 DRRRERERDRQLEWERRNRNGAREPVTPTANTTPRPTNKPYPTVHRQHHHHNKPRKPKPDSCMTY 519
                                                                    ...|.|...
Zfish   264 --------------------------------------------------------DSADRCQGG 272

  Fly   520 YDAISIIRGELFIFRGPYLWRIGTSG-LYNGYPTEIRRHWSALPENLTKVDAVYENKQRQIVFFI 583
            |||::.||.|:|.|||.:.||:..|| |.:..|..|...|..||.:..:|||.||.:...|||||
Zfish   273 YDAVANIRAEIFFFRGQHFWRVDHSGSLLSSTPALIHSFWIGLPPDTARVDAAYERRDGHIVFFI 337

  Fly   584 GREYYVFNSVMLAPGFPKPLASLGLPPT----LTHIDASFVWGHNNRTYMTSGTLYWRIDDYTGQ 644
            |.:|:||.:.|..||:|:.|:..||...    ...::|.|||.||.:||:.|..||||.|:..|:
Zfish   338 GNQYWVFRNTMALPGYPRQLSDWGLHTAAGQLAESVEAVFVWPHNGKTYVFSSGLYWRFDEAGGE 402

  Fly   645 --VELDYPRDMSIWSGVGYNIDAAFQYLDGKTYFFKNLGYWEFNDDRMKVAHARAKLSARRWMQC 707
              :|..||:..:|| |:..:.|....:|||:|||||:..||......:.:..|..|..|..||:|
Zfish   403 RKMEEGYPKPAAIW-GMPSHPDDIIAFLDGETYFFKDSNYWILQRGGLDLESASPKSIATDWMKC 466

  Fly   708 AR 709
            .|
Zfish   467 DR 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp2NP_995788.1 Peptidase_M10 143..301 CDD:278824 71/172 (41%)
ZnMc_MMP 143..301 CDD:239805 71/172 (41%)
HX 513..707 CDD:238046 80/200 (40%)
mmp25aXP_021327128.1 ZnMc_MMP 61..229 CDD:239805 71/172 (41%)
HX 267..466 CDD:238046 80/199 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 47 1.000 Domainoid score I11983
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 347 1.000 Inparanoid score I2272
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.870

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