DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GstT1 and vars1

DIOPT Version :10

Sequence 1:NP_610509.2 Gene:GstT1 / 35995 FlyBaseID:FBgn0050000 Length:228 Species:Drosophila melanogaster
Sequence 2:NP_001298275.1 Gene:vars1 / 114427 ZFINID:ZDB-GENE-010601-1 Length:1271 Species:Danio rerio


Alignment Length:214 Identity:45/214 - (21%)
Similarity:75/214 - (35%) Gaps:75/214 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FLSQPSRALWIAMKLGKTPFEDCPVALRKQEQLTDEYRSINRFQKVPAIV---DGKFQLGESVSI 72
            |...|.|.|          .:|.|..|.:..               ||:|   .|...|..:.::
Zfish    24 FCPSPPRIL----------HQDPPAELARSR---------------PALVLAGAGGTVLSGTSAV 63

  Fly    73 VRYLADKGVFSEQLYPKTLEERARVDEFLE---WQHFN------VRLVCSLFFRQVWLLPA-KGL 127
            ..|||..|            :||..|:..|   ||..:      ..:.|::.|..:.::.. |.|
Zfish    64 SWYLAATG------------KRAGSDKKQESQVWQWLSFAENELTPVACAVAFPLLGIMGVDKKL 116

  Fly   128 APAPKPESVKKLIKDVESNLGLLERLWLEKDFLVGDKLTVADIF-----------------GSSE 175
            ..:.:.| :.:::|.::..|.|       :.||||:.:|:||..                 ..|.
Zfish   117 QQSSRAE-LLRVLKALDGTLAL-------RTFLVGESVTLADAAVAMAALLPFKYALEPADRKSL 173

  Fly   176 INQMKLCQYNVNEKQFPKV 194
            :|..:.....||:.||.||
Zfish   174 VNVTRWFNTCVNQPQFLKV 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GstT1NP_610509.2 GST_N_Theta 5..80 CDD:239348 15/71 (21%)
GST_C_Theta 93..218 CDD:198292 29/129 (22%)
vars1NP_001298275.1 GST_C_ValRS_N 80..202 CDD:198327 26/121 (21%)
PTZ00419 291..1270 CDD:240411
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.