DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-1 and AT1G26761

DIOPT Version :9

Sequence 1:NP_610500.2 Gene:Smyd4-1 / 35985 FlyBaseID:FBgn0033427 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001117357.1 Gene:AT1G26761 / 6241260 AraportID:AT1G26761 Length:444 Species:Arabidopsis thaliana


Alignment Length:281 Identity:59/281 - (20%)
Similarity:95/281 - (33%) Gaps:87/281 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ARTFSQQNELITLN---ENYKDE-----------FETFKSLASMPADILQIFQKLALDLLQDLEQ 55
            :||......|.||:   ..|:::           ..|.||..:.....:.:.:.|..||      
plant    14 SRTVQPYRRLSTLSLRFPTYRNKRVSPFTLTITRCSTTKSREAGQDSSISLKRGLVFDL------ 72

  Fly    56 PVDRKGCAERSKNLREEGNLMFKESAS-----------GSSKDSVLKACRLYSEAVFEAENAV-E 108
                 |.::.|.:..|.|:.:.|...|           ||||                 :|.| :
plant    73 -----GVSKDSWHSEEIGSPVVKRFLSDNEERWYMWYHGSSK-----------------QNPVSD 115

  Fly   109 ELSLAFANRGIALQEYGYYREAYDDCSNALECG--------YPERLRHKVIMRQAFCAWKLKKIA 165
            .:.||.:|.||..:......|:.:|....:.||        ...|....|||..:    |::..:
plant   116 SIGLAVSNNGIHWERGNGKVESSEDVGLVMSCGEDWWGFDTASVRPGEVVIMSSS----KVRANS 176

  Fly   166 SLEEHLDYLGQLQLKESFEQQLEDLKQKLELLKNQPR-----EQETQGKVVDKSLGEILTDPG-- 223
            |: ..:.|.|  ..||:.|.|.:|.   ..:|.|..|     |...:.:|..:||      ||  
plant   177 SV-YWMYYTG--YTKETVEFQSQDF---TSVLGNPERFHLCDENAEKSRVYYRSL------PGLA 229

  Fly   224 --PRGRYMVAKEAISKGNVIF 242
              ..||:....|.......:|
plant   230 ISQDGRHWARIEGEHHSGALF 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-1NP_610500.2 zf-MYND 258..298 CDD:280009
SET <447..526 CDD:214614
AT1G26761NP_001117357.1 GH43_62_32_68_117_130 <99..>130 CDD:387370 11/47 (23%)
GH43_62_32_68_117_130 202..430 CDD:387370 13/55 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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