DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-1 and smyd2b

DIOPT Version :10

Sequence 1:NP_610500.2 Gene:Smyd4-1 / 35985 FlyBaseID:FBgn0033427 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001025394.3 Gene:smyd2b / 568616 ZFINID:ZDB-GENE-041001-201 Length:434 Species:Danio rerio


Alignment Length:492 Identity:113/492 - (22%)
Similarity:183/492 - (37%) Gaps:154/492 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 EILTDPGPRGRYMVAKEAISKGNVIFSERASCFVPL--EQLLICQQCAATLMSAPIPCPNCHQRV 279
            |....|| :||.:....|...|.::||..|..:|..  |:.|||:|| .|.......|..| ::.
Zfish    11 EQFASPG-KGRGLRVSRAYGVGELLFSCPAYSYVLSVGERGLICEQC-FTRKKGLAKCGKC-KKA 72

  Fly   280 VYCSRKCREAHSAIHKFECAA-------YR-KDILRLLGISHLALRL----------LLTYIPYI 326
            .||:..|::.:..:||.||.|       :| .:.:||  ::.:..||          :|..:..:
Zfish    73 FYCNANCQKKNWPMHKLECQAMCAFGENWRPSETVRL--VARIIARLKAQKERSPSEILLLLGEM 135

  Fly   327 RPHLQEMTSAKGMWEEIMNLSRKPEESENAPEYLRSLRMVSQLDQAIDEELNYHILCANLLQLYL 391
            ..||::|.:.|          |:..|:                          ||  |.|.|.|.
Zfish   136 EAHLEDMDNEK----------REMTEA--------------------------HI--AGLHQFYS 162

  Fly   392 KEHTDFYDQFHSLPASIEDWQLIISALILRFAGQLLANGHVGDALLGVGMEPKEFVMLQPELWQK 456
            | |.||.|.               .||:..|: |:..||..        :|.:|           
Zfish   163 K-HLDFPDH---------------QALLTLFS-QVHCNGFT--------VEDEE----------- 191

  Fly   457 PRHLKRGQLHNLSHSDPITAINLPYLSLCNHACEPSIRTKFDGCSVVNYAAKDILEGEEIFNCY- 520
                    |.||.     .|| .|.::|.||:|.|::...:.|.:....|.|||..|:||:..| 
Zfish   192 --------LSNLG-----LAI-FPDIALLNHSCSPNVIVTYRGINAEVRAVKDISPGQEIYTSYI 242

  Fly   521 TMDYRNSLKLQRSHPLKAIYKFECTCAKCTRTDPDQNYLSFHRYRCEKPNCRQEFLPDAKVQQNN 585
            .:.|..:.:|:|   |:.:|.|.|.|.:||....|...:|. |.|.::.. .:|.....:..:|:
Zfish   243 DLLYPTADRLER---LRDMYYFSCDCKECTTKSMDVVKMSV-RKRSDEIG-EKEIKDMVRYARNS 302

  Fly   586 LRWWLRCNAEKPITCTVCHELQHFAWYNEFLGLIGSSADSSKRQALFKAFDDLDKWLVDHHSLKR 650
            :..:.|...:|..|              |.|.:...|.|.     :...|||.:.:::  |.:.:
Zfish   303 MENFRRAKQDKSPT--------------ELLEMCELSIDK-----MSTVFDDSNIYIL--HMMYQ 346

  Fly   651 IMAEELVTACFYEIDGGTSLDEFEYEDLARIIRKQLE 687
            .|.     .|.:..|         ||...|...|.::
Zfish   347 AMG-----ICLFTED---------YEGAVRYGEKVIK 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-1NP_610500.2 SET 217..>252 CDD:394802 11/34 (32%)
zf-MYND 258..298 CDD:460312 11/39 (28%)
SET <359..549 CDD:394802 47/190 (25%)
smyd2bNP_001025394.3 None

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