DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-1 and Smyd4-4

DIOPT Version :10

Sequence 1:NP_610500.2 Gene:Smyd4-1 / 35985 FlyBaseID:FBgn0033427 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster


Alignment Length:600 Identity:145/600 - (24%)
Similarity:236/600 - (39%) Gaps:132/600 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LNENYKDEFETFKSLASMPADILQIFQKLALDLLQDLEQPVDRKGCAERSKNLREEGNLMFKESA 81
            |.||::......::|..... |.:||  |.:.|.:|        .|.:||...|..||..|    
  Fly    30 LKENHRKVDFVMRALIDFKY-IEKIF--LNVTLRED--------KCNKRSVEFRMLGNEQF---- 79

  Fly    82 SGSSKD-SVLKACRLYSEAVFEAENAVEELSLAFANRGIALQEYGYYREAYDDCSNALECGYPER 145
              |.|: :..:|..||::::..||...|.||:.:|||...|.|:..||:..|:...|.:..||.|
  Fly    80 --SLKNRNYFQALELYNKSICYAEPNSEHLSIGYANRSAVLFEWKRYRQCLDNIKLARQANYPAR 142

  Fly   146 LRHKVIMRQAFCAWKLKKIASLEEHLDYLGQLQLKESFE--QQLEDLKQKLELLKNQPREQETQG 208
            |.||:..|:..|.      ..|::....:...:.|.|||  .|:..:...|||       :||..
  Fly   143 LSHKLDKRERDCQ------QLLDQQPPDVVPYEFKLSFEPHAQVPFIADCLEL-------RETAA 194

  Fly   209 KVVDKSLGEILTDPGPRGRYMVAKEAISKGNVIFSERASCFVPLEQL--LICQQCAATLMSAPIP 271
            :                ||::|....::.|:::..|...|...|..:  :.|..|........||
  Fly   195 E----------------GRFVVTNRDLAVGDLVSVEEPFCSTLLTPMRYIRCATCKRENYLTLIP 243

  Fly   272 CPNCHQRVVYCSRKCRE-AHSAIHKFECAAYRKDIL-RLLGISH-LALRLLLTYIPYIRPHLQEM 333
            |.:|.. .::||.:|:. |....|::||...  |.| |:....| :|||..|..: .|.|.::|:
  Fly   244 CDSCCS-TMFCSEECKSIAMQTYHRYECPII--DFLNRMFNKIHCIALRTTLVAL-NIFPSIEEL 304

  Fly   334 TSAKGMWEEIMNLSR----------KPEESENAPEYL---RSLRMVSQLDQAIDEELNYHILCAN 385
            ..   ..|:..|..:          .|||...|...|   :.||.||.|.|.       .::|| 
  Fly   305 ID---FCEQEQNQDKCAFDLNYNELTPEEHYRAIHGLVTNQHLRSVSDLFQR-------SVVCA- 358

  Fly   386 LLQLYLKEHTDFYDQFHSLPASIEDWQLIISALILRFAGQLLANGHVGDALLGVGMEPKEFVMLQ 450
            :|:.::.|:|...:....     |:.....:.|:.|......:|.|      |:           
  Fly   359 VLKHFIIEYTPVKEYLGG-----EEGVNFFTDLLFRHLQTSPSNMH------GI----------- 401

  Fly   451 PELWQKPRHLKRGQLHNLSHSDPITAINLPYLSLCNHACEPSIRTKFDGCSVVNYAAKDILEGEE 515
             :|.::....|..|    :||....|    :|||.||:|.|:....::|.....:..:.|..|..
  Fly   402 -DLVEQVNETKDDQ----THSSGAYA----FLSLINHSCAPNTVRIYEGTKAYMFVLRPIKAGNV 457

  Fly   516 IFNCYTMDYRNSLKLQRSHPLKAIYKFECTCAKC-----------------TRTDPDQNYLSFHR 563
            :::.|...:....|.||...|...|:|:|.|..|                 :.||..:..||.:.
  Fly   458 LYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGCELNYPMFGMMPHKATVPSVTDDTELALSSYN 522

  Fly   564 YRCEKPNCRQ--EFL 576
            |.....|.|:  :||
  Fly   523 YDFAVSNYRKYCDFL 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-1NP_610500.2 SET 217..>252 CDD:394802 6/34 (18%)
zf-MYND 258..298 CDD:460312 11/40 (28%)
SET <359..549 CDD:394802 43/192 (22%)
Smyd4-4NP_610730.1 SET_SMYD4 180..491 CDD:380934 85/379 (22%)
zf-MYND 230..270 CDD:460312 11/40 (28%)

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