DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-1 and Smyd2

DIOPT Version :9

Sequence 1:NP_610500.2 Gene:Smyd4-1 / 35985 FlyBaseID:FBgn0033427 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_996733.1 Gene:Smyd2 / 289372 RGDID:727785 Length:433 Species:Rattus norvegicus


Alignment Length:467 Identity:96/467 - (20%)
Similarity:166/467 - (35%) Gaps:154/467 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 RGRYMVAKEAISKGNVIFS-----------ERA----SCFVPLEQLLICQQCAATLMSAPIPCPN 274
            :||.:.|......|:::||           ||.    .||...|.|..|.:|             
  Rat    17 KGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRC------------- 68

  Fly   275 CHQRVVYCSRKCREAHSAIHKFECAAYRKDILRLLGISHLALRLLLTYIPYIRPHLQEMTSAKGM 339
              ::..||..:|::....:||.||::                  ::.:.....|......:|:.:
  Rat    69 --KQAFYCDVECQKEDWPLHKLECSS------------------MVVFGENWNPSETVRLTARIL 113

  Fly   340 WEEIMNLSRKPEESENAPEYLRSLRMVSQLDQAIDEELNYHIL--CANLLQLYLKEHTDFYDQFH 402
            .::.|:..|.|.|     :.|......|.||: :|.|....|.  .|.|.|.|.| |.:|.|.  
  Rat   114 AKQKMHPERTPSE-----KLLAVREFESHLDK-LDNEKKDLIQSDIAALHQFYSK-HLEFPDH-- 169

  Fly   403 SLPASIEDWQLIISALILRFAGQLLANGHVGDALLGVGMEPKEFVMLQPELWQKPRHLKRGQLHN 467
                         |:|::.|| |:..||..        :|.:|                      
  Rat   170 -------------SSLVVLFA-QVNCNGFT--------IEDEE---------------------- 190

  Fly   468 LSHSDPITAINLPYLSLCNHACEPSIRTKFDGCSVVNYAAKDILEGEEIFNCY------TMDYRN 526
            |||   :.:...|.::|.||:|.|::...:.|......|.::|..|:|:|..|      |.|   
  Rat   191 LSH---LGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTED--- 249

  Fly   527 SLKLQRSHPLKAIYKFECTCAKCTRTDPDQNYLSFHRYRCEKPNCRQEFLPDAKVQQNNLRWWLR 591
                 |:..|:..|.|.|.|.:||..|.|:..:...  :...|       |.|:..::.:|:   
  Rat   250 -----RNDRLRDSYFFTCECRECTTKDKDKAKVEIR--KLSNP-------PQAEAIRDMVRY--- 297

  Fly   592 CNAEKPITCTVCHEL---QHFAWYNEFLGLIGSSADSSKRQALFKAFDDLDKWLVDHHSLKRIMA 653
                   ...|..|.   :|:...:|.|.:...|     ::.:...|:|.:.:::  |.:.:.|.
  Rat   298 -------ARNVIEEFRRAKHYKSPSELLEICELS-----QEKMSSVFEDSNVYML--HMMYQAMG 348

  Fly   654 EELVTACFYEID 665
                 .|.|..|
  Rat   349 -----VCLYMQD 355

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Smyd4-1NP_610500.2 zf-MYND 258..298 CDD:280009 7/39 (18%)
SET <447..526 CDD:214614 18/84 (21%)
Smyd2NP_996733.1 SET_SMYD2 7..269 CDD:380979 76/348 (22%)
S-adenosyl-L-methionine binding. /evidence=ECO:0000250 17..19 0/1 (0%)
zf-MYND 52..90 CDD:396356 11/52 (21%)
Peptide substrate binding. /evidence=ECO:0000250 183..185 1/1 (100%)