DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smyd4-1 and ubxn11

DIOPT Version :9

Sequence 1:NP_610500.2 Gene:Smyd4-1 / 35985 FlyBaseID:FBgn0033427 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_002934683.1 Gene:ubxn11 / 100493049 XenbaseID:XB-GENE-985480 Length:524 Species:Xenopus tropicalis


Alignment Length:68 Identity:17/68 - (25%)
Similarity:36/68 - (52%) Gaps:12/68 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 LKKIASLEEHLDYLGQLQLKESFEQQLEDLKQKLELLK----------NQPREQETQGKVVDKSL 215
            :|::..||..:  ..|.|..:|.:|::.||::|::.|:          .:.:|.|.|.|.::|.:
 Frog   141 MKRLGELERRV--RAQEQEIQSKDQEIRDLEKKIKRLQQLHSGNATSGRREQELEHQCKELNKKI 203

  Fly   216 GEI 218
            .|:
 Frog   204 SEM 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-1NP_610500.2 zf-MYND 258..298 CDD:280009
SET <447..526 CDD:214614
ubxn11XP_002934683.1 Lebercilin <146..210 CDD:373968 16/63 (25%)
SEP 286..358 CDD:369673
UBX_UBXN11 438..512 CDD:340597
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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