DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brp and spd-5

DIOPT Version :9

Sequence 1:NP_001246228.1 Gene:brp / 35977 FlyBaseID:FBgn0259246 Length:2238 Species:Drosophila melanogaster
Sequence 2:NP_491539.1 Gene:spd-5 / 172155 WormBaseID:WBGene00004955 Length:1198 Species:Caenorhabditis elegans


Alignment Length:1342 Identity:248/1342 - (18%)
Similarity:495/1342 - (36%) Gaps:363/1342 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   771 DYP--KLPQEH-KRQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHY 832
            ||.  ||.||: :.::::::|    .::::|||.::::|.|:   ::.|.:...:....|.||. 
 Worm   107 DYVDLKLGQENVQEKMEQYKL----MEEDLLAMQSRIETSED---NFARQMKEFEAQKHAMEER- 163

  Fly   833 NMLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIEN 897
                  ::|:.....:.|.......:|||..:.::|.....||.     ..::|||:.|:.|:.:
 Worm   164 ------IKELELSATDANNTTVGSFRGTLDDILKKNDPDFTLTS-----GYEERKINDLEAKLLS 217

  Fly   898 LEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGD------------------KEKQM 944
            ..|.:.|.::.:...|..|....|..:.||.....||.|.|.                  ...:.
 Worm   218 EIDKVAELEDHIQQLRQELDDQSARLADSENVRAQLEAATGQGILGAAGNAMVPNSTFMIGNGRE 282

  Fly   945 AQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQS 1009
            :|.|||                   .:|          ::.|:|:|                   
 Worm   283 SQTRDQ-------------------LNY----------IDDLETKL------------------- 299

  Fly  1010 ELGKSKAELEKATCEMGRSSADWESTKQRIARLELENE--RLKHDLERSQNVQKLMFETGKISTT 1072
                  |:.:|            |:.|.|.|.:|..|:  :|:|::           .|...::|
 Worm   300 ------ADAKK------------ENDKARQALVEYMNKCSKLEHEI-----------RTMVKNST 335

  Fly  1073 FGRTTMTT-SQELDRAQERADKASAELRRTQAELRVTQSDAERAREEAAALQEKLEKSQGEVYRL 1136
            |..::|.. .|..|..:.:..|.:.||...:||.|..:...::.......|...|.:|     ||
 Worm   336 FDSSSMLLGGQTSDELKIQIGKVNGELNVLRAENRELRIRCDQLTGGDGNLSISLGQS-----RL 395

  Fly  1137 KAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQL------Q 1195
            .|.:  |..:.:|:.|..|  ..|.|.....|:....::|:.|..:..|.:.:...|.      .
 Worm   396 MAGI--ATNDVDSIGQGNE--TGGTSMRILPRESQLDDLEESKLPLMDTSSAVRNQQQFASMWED 456

  Fly  1196 HEKLQNSLDKAQNEV--------------DHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLD 1246
            .|.:::||....|:.              |..|..|.:...:|..:|::|.|..:.:  |:|...
 Worm   457 FESVKDSLQNNHNDTLEGSFNSSMPPPGRDATQSFLSQKSFKNSPIVMQKPKSLHLH--LKSHQS 519

  Fly  1247 KALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKA 1311
            :..|                                            |.::..|.|.:|     
 Worm   520 EGAG--------------------------------------------EQIQNNSFSTKT----- 535

  Fly  1312 ARDREAMQTDLEVLKERYEKSHAIQQKLQME------RDDAVTEVEILKEKLDKALYASQKLIDE 1370
             ......|:.:.:|       |.:||.|...      :.|....||.::||:.:...|..:|.:.
 Worm   536 -ASPHVSQSHIPIL-------HDMQQILDSSAMFLEGQHDVAVNVEQMQEKMSQIREALARLFER 592

  Fly  1371 KDTSNKEFEKMLEKY---DRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQD 1432
            ..:|...||::||:.   |...::|.:::...:|:..|:..:....|       .|.:||..:..
 Worm   593 LKSSAALFEEILERMGSSDPNADKIKKMKLAFETSINDKLNVSAILE-------AAEKDLHNMSL 650

  Fly  1433 ESTRLQEACDRAALQLSR----AKECEDNARSEL-----------EHSRDRFDKLQTDIRRAQGE 1482
            ..:.|:::....|.:.||    |.:.||.|.|.|           ..:.|..:|||.::      
 Worm   651 NFSILEKSIVSQAAEASRRFTIAPDAEDVASSSLLNASYSPLFKFTSNSDIVEKLQNEV------ 709

  Fly  1483 KEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKL-QDTD 1546
                 |||:.   |||.|.....:  :.:..:....:...:...:|.:..|.|:..|:|. ::..
 Worm   710 -----SELKN---ELEMARTRDMR--SPLNGSSGRLSDVQINTNRMFEDLEVSEATLQKAKEENS 764

  Fly  1547 TFGRETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNM---ESKL 1608
            |...:...|:....::..||.:...||.....:...|.|:..|.::..|:....:.::   |::|
 Worm   765 TLKSQFAELEANLHQVNSKLGEVRCELNEALARVDGEQETRVKAENALEEARQLISSLKHEENEL 829

  Fly  1609 HETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVD--RLRLQQSSVSPGD 1671
            .:|...:.:...|..|   :.|..:|||..|..|.:|:::..::|.:|::  |:|.:::.    :
 Worm   830 KKTITDMGMRLNEAKK---SDEFLKSELSTALEEEKKSQNLADELSEELNGWRMRTKEAE----N 887

  Fly  1672 PVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTEST 1736
            .|..::|..|.:    .:.|..|...:||...|..|.:..:.::.:  .|.::.|||.:|:.|:.
 Worm   888 KVEHASSEKSEM----LERIVHLETEMEKLSTSEIAADYCSTKMTE--RKKEIELAKYREDFENA 946

  Fly  1737 RI-EFERMGAELGRLHDRLEKAEAEREALRQANRSGGAGAAPHPQLEKHVQKLESDVKQLAMERE 1800
            .| ..||:..|:..|..:..||:.                            :.|::..:.:..:
 Worm   947 AIVGLERISKEISELTKKTLKAKI----------------------------IPSNISSIQLVCD 983

  Fly  1801 QLVLQLEKSQEILMNFQKELQNAEAELQKTREENRKLR--------NGHQVPPVAAPPAG-PSPA 1856
            :|..:|.:.:|....:.|.:::...:::|.:.|...|.        |...||||....:| |:..
 Worm   984 ELCRRLSREREQQHEYAKVMRDVNEKIEKLQLEKDALEHELKMMSSNNENVPPVGTSVSGMPTKT 1048

  Fly  1857 EFQ--AMQKEIQTLQQKLQESERALQAAGPQQAQAAAAAGASREEIEQWRKVIEQEKSRADMADK 1919
            ..|  |........:|.|.||..|:.|...:..:....:|...|..|....||.:.:...|.   
 Worm  1049 SNQKCAQPHYTSPTRQLLHESTMAVDAIVQKLKKTHNMSGMGPELKETIGNVINESRVLRDF--- 1110

  Fly  1920 AAQEMHKRI-------------QLMDQHIKD---QHAQMQKMQQQMQQQQQAAQQAVQQAAQQQQ 1968
                :|:::             :.:||.|.|   .|.....:::|:::.:               
 Worm  1111 ----LHQKLILFKGIDMSNWKNETVDQLITDLGQLHQDNLMLEEQIKKYK--------------- 1156

  Fly  1969 SAAGAGGADPKELEKVRGELQAACTE-RDRFQQQLELLVTEL 2009
                      |||:..:..:.....| :||.:.::..:.|::
 Worm  1157 ----------KELKLTKSAIPTLGVEFQDRIKTEIGKIATDM 1188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brpNP_001246228.1 KRTAP 332..401 CDD:256601
Myosin_tail_1 789..1824 CDD:279860 203/1106 (18%)
SMC_prok_B 1509..>2215 CDD:274008 96/536 (18%)
Bud13 2091..>2157 CDD:286779
spd-5NP_491539.1 Smc <68..>328 CDD:224117 58/316 (18%)
Smc <702..1023 CDD:224117 71/377 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18861
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.