DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wnt2 and wnt3a

DIOPT Version :9

Sequence 1:NP_476810.1 Gene:Wnt2 / 35975 FlyBaseID:FBgn0004360 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_002939354.2 Gene:wnt3a / 100488632 XenbaseID:XB-GENE-1217288 Length:352 Species:Xenopus tropicalis


Alignment Length:357 Identity:159/357 - (44%)
Similarity:206/357 - (57%) Gaps:25/357 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IHNKLLIYILWIMEIRLVSSF----TSVMLCGRIPGLTPGQRNMCREMPDALIALGEGHQLGAQE 64
            :|.....|.:| ..:.:...:    |..:.||.||||...|...||...:.:.::.||.::|.||
 Frog    13 LHQVAATYPIW-WSLAVGQQYSTLGTQPIPCGTIPGLVAKQMRFCRNYMEIMPSVAEGVKIGIQE 76

  Fly    65 CQHQFRGHRWNCSEVWQR-NVFAHVIPTASREAAYTYAIASAGAAYAVTAACARGNISTCGCDVR 128
            |||||||.||||:.|... .:|..|:..|:||:|:.:||||||.|:|||.:||.|:.:.||||..
 Frog    77 CQHQFRGRRWNCTTVNDNLAIFGPVLDKATRESAFVHAIASAGVAFAVTRSCAEGSATICGCDSH 141

  Fly   129 HKATPTGGGTPDEPWKWGGCSADVDFGMRYARRFMDARELERDSRTLMNLHNNRAGRTLVKKMLR 193
            ||      |.|.|.|||||||.|:|||...:|.|.||||...|:|:.||.|||.||||.:.....
 Frog   142 HK------GPPGEGWKWGGCSEDMDFGSMVSREFADARENRPDARSAMNRHNNEAGRTSILDHRH 200

  Fly   194 TDCKCHGVSGSCVMKTCWKSLPPFRLVGDRLMLKYQKAKTVQAVKGKRGLRLVLSRKKHAGTARA 258
            ..|||||:||||.:||||.|.|.||::||.|..||..|..:          :|...::..|....
 Frog   201 LKCKCHGLSGSCEVKTCWWSQPDFRVIGDYLKDKYDSASEM----------VVEKHRESRGWVET 255

  Fly   259 QKPVLDW---PKRMELIYLEASPNYCERSLQTGSQGTSGRTCQRTGHGPQSCDLLCCGRGHNTQH 320
            .:|...:   |...:|||.|:|||:||.:.:|||.||..|.|..|.||...||||||||||||:.
 Frog   256 LRPKYTFFKPPTERDLIYYESSPNFCEPNPETGSFGTRDRVCNVTSHGIDGCDLLCCGRGHNTRT 320

  Fly   321 IRRTTQCRCQFRWCCEVKCDECDESYEEFTCK 352
            .:|..:|.|.|.|||.|.|.||...|:..|||
 Frog   321 EKRKEKCHCIFHWCCYVSCQECIRVYDVHTCK 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Wnt2NP_476810.1 wnt 36..352 CDD:278536 148/319 (46%)
wnt3aXP_002939354.2 Wnt_Wnt3_Wnt3a 39..352 CDD:381709 153/328 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.